cluster # 3915

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3915 cluster # 3915 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3915#0 length = 723 sequences # 1

consensus_3915#1 length = 498 sequences # 1
consensus_3915#2 length = 311 sequences # 1

consensusID : consensus_3915#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence

                              [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTTGTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCTTGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGGTGTTGTTAATTTTCGGCAATTCGGGAATCTAAATAAAAGCGAAGCAATCAGACCGAACGGTACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTTTGAATTCTTTAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACCCCTAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAACTCCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGTATTTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATTGGATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGCGTTGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAATAACAA]

[+] EMBL BM604988             [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTTGTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCTTGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGGTGTTGTTAATTTTCGGCAATTCGGGAATCTAAATAAAAGCGAAGCAATCAGACCGAACGGTACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTTTGAATTCTTTAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACCCCTAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAACTCCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGTATTTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATTGGATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGCGTTGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAATAACAA]




>consensus_3915#0
CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGA
TAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTT
GTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCT
TGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGG
TGTTGTTAATTTTCGGCAATTCGGGAATCTAAATAAAAGCGAAGCAATCAGACCGAACGG
TACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTTTGAATTCTT
TAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACCCC
TAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAACT
CCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGTAT
TTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATTGG
ATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGCGT
TGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAATAA
CAA

consensusID : consensus_3915#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATCAAAGTAGCGTGGAAAAAGACCCAAACTGAAAAGTGGTTCGAAATAGTGCCTAGCTTGCAGCGTTAAGAATGTGACCGGTCCGATGTAAAAGCGCTTGGAGCGAGAACGAAACGCAACAAATCAACGCTATATTAAGCAACATCTCGGGAACGTCACGCCACAACCGGTGATCTTCCCTAGCCAATTCGTTTTAGAATCTCCCTGTAGCTTCTTACCGCACCACGAGATATAGAGCAACCTGCACGAAATAAGTCTGCACCAAGCAAAAAAAAAAACAACTACATATCAACCATGCCGGCTTACGCTGGGTTCGACAGTTTTGGAACGTCCCGCCGGACGGC]

[+] EMBL BM636963             [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATCAAAGTAGCGTGGAAAAAGACCCAAACTGAAAAGTGGTTCGAAATAGTGCCTAGCTTGCAGCGTTAAGAATGTGACCGGTCCGATGTAAAAGCGCTTGGAGCGAGAACGAAACGCAACAAATCAACGCTATATTAAGCAACATCTCGGGAACGTCACGCCACAACCGGTGATCTTCCCTAGCCAATTCGTTTTAGAATCTCCCTGTAGCTTCTTACCGCACCACGAGATATAGAGCAACCTGCACGAAATAAGTCTGCACCAAGCAAAAAAAAAAACAACTACATATCAACCATGCCGGCTTACGCTGGGTTCGACAGTTTTGGAACGTCCCGCCGGACGGC]




>consensus_3915#1
CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGA
TAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGTCGTTAT
CAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATCAAAGTAGCGTGGAAAAAGACCCA
AACTGAAAAGTGGTTCGAAATAGTGCCTAGCTTGCAGCGTTAAGAATGTGACCGGTCCGA
TGTAAAAGCGCTTGGAGCGAGAACGAAACGCAACAAATCAACGCTATATTAAGCAACATC
TCGGGAACGTCACGCCACAACCGGTGATCTTCCCTAGCCAATTCGTTTTAGAATCTCCCT
GTAGCTTCTTACCGCACCACGAGATATAGAGCAACCTGCACGAAATAAGTCTGCACCAAG
CAAAAAAAAAAACAACTACATATCAACCATGCCGGCTTACGCTGGGTTCGACAGTTTTGG
AACGTCCCGCCGGACGGC

consensusID : consensus_3915#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [CCAGGTTTTAGACACACGTGCGCGCTGGCGGTCGGTGGAAAAGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATNAACAGTAGTGTGGAAAAAGACCCAAACTGAAAAGTGGTCCGAAATAGTGCCTTGCAGGCGTTAACGAATGTTGACCGGTCCGGTGTGCAACTGGTGCTTGGAGCGATGATAGACGACNTGCTATGAAATCAGACGCGATACGCAAGCAATCATCTCTATACACAGTCACAGNTCTCGGCGACGTCTACTCCACTAACGGTGATCGTTCCCTAGACTACATCCG]

[+] EMBL AL695837             [CCAGGTTTTAGACACACGTGCGCGCTGGCGGTCGGTGGAAAAGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATNAACAGTAGTGTGGAAAAAGACCCAAACTGAAAAGTGGTCCGAAATAGTGCCTTGCAGGCGTTAACGAATGTTGACCGGTCCGGTGTGCAACTGGTGCTTGGAGCGATGATAGACGACNTGCTATGAAATCAGACGCGATACGCAAGCAATCATCTCTATACACAGTCACAGNTCTCGGCGACGTCTACTCCACTAACGGTGATCGTTCCCTAGACTACATCCG]




>consensus_3915#2
CCAGGTTTTAGACACACGTGCGCGCTGGCGGTCGGTGGAAAAGGTCGTTATCAGTGCGTC
TCTTATGTGACCCGACAGTGACGGTATNAACAGTAGTGTGGAAAAAGACCCAAACTGAAA
AGTGGTCCGAAATAGTGCCTTGCAGGCGTTAACGAATGTTGACCGGTCCGGTGTGCAACT
GGTGCTTGGAGCGATGATAGACGACNTGCTATGAAATCAGACGCGATACGCAAGCAATCA
TCTCTATACACAGTCACAGNTCTCGGCGACGTCTACTCCACTAACGGTGATCGTTCCCTA
GACTACATCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3915#1      CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGA 60
consensus_3915#2      ------------------------------------------------------------
consensus_3915#0      CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGA 60
                                                                                  

consensus_3915#1      TAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGT-CG--- 116
consensus_3915#2      -------CCAGGTTTTAGACACAC-GTGCGCGCTGGCGGTCG-GTGGAAAAGGT-CG--- 47
consensus_3915#0      TAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTT 120
                              **      **     * * * ** *** ** *   *    *  *** **   

consensus_3915#1      ------TTATCAGTGCGTCTCTTATGTGACCCGAC-AGTGA--CGGTATCAA-AGTAGC- 165
consensus_3915#2      ------TTATCAGTGCGTCTCTTATGTGACCCGAC-AGTGA--CGGTATNAACAGTAGT- 97
consensus_3915#0      GTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCT 180
                            ***   *   ** * ** *  ***    *  ***   **     ** *** *  

consensus_3915#1      -GTGGAAAAAGACCCAAACTGAAAAGTGGTTCGAAATAGTGCCT---AGCTTGC----AG 217
consensus_3915#2      -GTGGAAAAAGACCCAAACTGAAAAGTGGTCCGAAATAGTGCCT---TGCA-------GG 146
consensus_3915#0      TGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGG 240
                       ***  *    **      ** * *   *   *    ****  *    **         *

consensus_3915#1      CGTTAA-GAATGT-GACCGGTCCGATGTAAAA---GCGCTTGGAGCGA-------GAACG 265
consensus_3915#2      CGTTAACGAATGTTGACCGGTCCGGTGTGCAACTGGTGCTTGGAGCGATGA---TAGACG 203
consensus_3915#0      TGTTGTTAATTTTCGGCAATTCGGGAATCTAAAT-AAAAGCGAAGCAATCAGACCGAACG 299
                       ***    * * * * *   ** *   *  **         * *** *         ***

consensus_3915#1      AAACGCAAC-AAATCA-ACGCTATAT-TAAGCAA-CATCTCGGGAACGTCACGCCACAAC 321
consensus_3915#2      ACNTGCTATGAAATCAGACGCGATACGCAAGCAATCATCTCT---ATACACAGTCACAGN 260
consensus_3915#0      GTACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTT-TGAATTC 358
                                * **      *       *** *   **       *         *    

consensus_3915#1      CGGTGATCTTCCCTAGCCAAT---TCGTTTTAGAATCTCCCTGTAGCTTCTTACCGCACC 378
consensus_3915#2      TCTCGGCGACGTCTACTCCAC---TAACGGTG--ATCGTTCCCTAGACTACATCCG---- 311
consensus_3915#0      TTTAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACC 418
                                  **          *     *   *        **   *           

consensus_3915#1      AC---GAGATATAGAGCAACCTGCACG---AAATAAGTCTGCACCAAGCAAAAAAAAAAA 432
consensus_3915#2      ------------------------------------------------------------
consensus_3915#0      CCTAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAA 478
                                                                                  

consensus_3915#1      CAACTACATATCAACCATGCCG--GCTTACGCTGGGTTCGACAGTTTTGGAACGTCCCGC 490
consensus_3915#2      ------------------------------------------------------------
consensus_3915#0      CTCCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGT 538
                                                                                  

consensus_3915#1      CGGACGGC---------------------------------------------------- 498
consensus_3915#2      ------------------------------------------------------------
consensus_3915#0      ATTTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATT 598
                                                                                  

consensus_3915#1      ------------------------------------------------------------
consensus_3915#2      ------------------------------------------------------------
consensus_3915#0      GGATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGC 658
                                                                                  

consensus_3915#1      ------------------------------------------------------------
consensus_3915#2      ------------------------------------------------------------
consensus_3915#0      GTTGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAAT 718
                                                                                  

consensus_3915#1      -----
consensus_3915#2      -----
consensus_3915#0      AACAA 723