cluster # 3922

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Anopheles gambiae
cluster # 3922 cluster # 3922 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3922#0 length = 772 sequences # 2

consensus_3922#1 length = 504 sequences # 1

consensusID : consensus_3922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence

                              [CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGCGTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGAAATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGACGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCTGGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACGTCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCTGAAACCAACAAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAGG]

[+] EMBL BX626614             [CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGCGTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGAAATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGACGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCTGGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACGTCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTT                                                                            ]
[+] EMBL BX628993             [                                                                                                                                                                                                    TGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGACGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCTGGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACAAGACGTCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCTGAAACCAACAAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAGG]




>consensus_3922#0
CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGC
GTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGA
AATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAA
CAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAA
TCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGT
ACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTAC
CGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGA
CGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAA
ACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCT
GGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGT
TTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACGTCATTATTT
GGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCTGAAACCAAC
AAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAGG

consensusID : consensus_3922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [CAGAATCCCCCGAGGTATGATAGGACATATTATAAGGAAATTGGAAGTACGTAGAGAAACAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGGTAGGACGATGGTAATATACATGGTATGGAAAACAAGTTCCAATGTATAGACGATGCAAANATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGCTCTGGCGTCCGGCTGTTATTGGGCCACCAGCCAGCGTGCATCTGTCGA]

[+] EMBL AL696015             [CAGAATCCCCCGAGGTATGATAGGACATATTATAAGGAAATTGGAAGTACGTAGAGAAACAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGGTAGGACGATGGTAATATACATGGTATGGAAAACAAGTTCCAATGTATAGACGATGCAAANATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGCTCTGGCGTCCGGCTGTTATTGGGCCACCAGCCAGCGTGCATCTGTCGA]




>consensus_3922#1
CAGAATCCCCCGAGGTATGATAGGACATATTATAAGGAAATTGGAAGTACGTAGAGAAAC
AGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTA
GTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGA
TCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGC
TAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGC
AGAAATGCTACGAAATACGTAGAACATGGGGGTAGGACGATGGTAATATACATGGTATGG
AAAACAAGTTCCAATGTATAGACGATGCAAANATTAAAACAGCCGACTGGTCGTCATCAC
AGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGCTCTGGCGTCCGGCTGTTATTGGGC
CACCAGCCAGCGTGCATCTGTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3922#0      CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGC 60
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      GTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGA 120
consensus_3922#1      ----------------CAGAATCCCCCGAGGTATGA-----TAGGACATA-TTATAAGGA 38
                                       *  **     *   * ***     ********* *********

consensus_3922#0      AATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAA 180
consensus_3922#1      AATT-GGAAGTACGTAGAGAAAC-AGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAA 96
                      **** ****************** ************************************

consensus_3922#0      CAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAA 240
consensus_3922#1      CAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAA 156
                      ************************************************************

consensus_3922#0      TCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGT 300
consensus_3922#1      TCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGT 216
                      ************************************************************

consensus_3922#0      ACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTAC 360
consensus_3922#1      ACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTAC 276
                      ************************************************************

consensus_3922#0      CGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGG-TAGG 419
consensus_3922#1      CGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGGTAGG 336
                      ******************************************************* ****

consensus_3922#0      ACGATGGTAATATACATGGTATGGAAAA-AAGTTCCAATGTATAGACGATGCAAAGATTA 478
consensus_3922#1      ACGATGGTAATATACATGGTATGGAAAACAAGTTCCAATGTATAGACGATGCAAANATTA 396
                      **************************** ************************** ****

consensus_3922#0      AAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTAC-GC 537
consensus_3922#1      AAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGC 456
                      ********************************************************* **

consensus_3922#0      TCTGGCGTCCGG-TGTTAT--GGCCAC-AGCAGG--TGCATCTGTCGAAAGATATCAAAC 591
consensus_3922#1      TCTGGCGTCCGGCTGTTATTGGGCCACCAGCCAGCGTGCATCTGTCGA------------ 504
                      ************ ******  ****** ***  *  ************            

consensus_3922#0      TCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACG 651
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      TCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCT 711
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      GAAACCAACAAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAG 771
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      G 772
consensus_3922#1      -