cluster # 3924

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Anopheles gambiae
cluster # 3924 cluster # 3924 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3924#0 length = 608 sequences # 1

consensus_3924#1 length = 600 sequences # 2

consensusID : consensus_3924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCGTGTGTTTCCAAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGCACTTTGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTTCGCACGAGACGTGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGCTGTGCATGGGAACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGGAGAAGGTGTGTAGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCATTGACTGTGTAGAAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACAACGGGCTTTTCAACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGTATATGTGTATGTGTGTGTGCGTTTGTGCGTCCGGTTCCATCCGTGTTTTCTGTGGTGATCGCGTCCGACAGTGATCCCC]

[+] EMBL BM615007             [CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCGTGTGTTTCCAAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGCACTTTGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTTCGCACGAGACGTGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGCTGTGCATGGGAACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGGAGAAGGTGTGTAGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCATTGACTGTGTAGAAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACAACGGGCTTTTCAACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGTATATGTGTATGTGTGTGTGCGTTTGTGCGTCCGGTTCCATCCGTGTTTTCTGTGGTGATCGCGTCCGACAGTGATCCCC]




>consensus_3924#0
CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGT
ACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCGTG
TGTTTCCAAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGAC
TGTATGCACTTTGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTTCGCACGAGACG
TGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGCTGTGCATGGGA
ACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGGAGAAGGTGTGT
AGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCATTGACTGTGTAG
AAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACAACGGGCTTTTC
AACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGTATATGTGTATG
TGTGTGTGCGTTTGTGCGTCCGGTTCCATCCGTGTTTTCTGTGGTGATCGCGTCCGACAG
TGATCCCC

consensusID : consensus_3924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 600
fasta sequence

                              [ATTTATTTTCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTTTTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAGTCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGACGTGCGCGCGTTCGCACACAGACCACTACCACCACCACCATCAGCCTGTGGGCTCGCCGAGGGTCTAGTAGTCTGTTTTTGTGTGTTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTCCAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGC]

[+] EMBL BM600268             [ATTTATTTTCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTTTTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAGTCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCA                                                                                                                                                                                                                                                                               ]
[+] EMBL BX617303             [                                           GTTTCCTGTTTTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAGTCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGACGTGCGCGCGTTCGCACACAGACCACTACCACCACCACCATCAGCCTGTGGGCTCGCCGAGGGTCTAGTAGTCTGTTTTTGTGTGTTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTCCAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGC]




>consensus_3924#1
ATTTATTTTCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTTTTGTTCG
CCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGT
GCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGAC
GAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAG
TCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGA
GTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGACGTGCGCGCGTTCGCAC
ACAGACCACTACCACCACCACCATCAGCCTGTGGGCTCGCCGAGGGTCTAGTAGTCTGTT
TTTGTGTGTTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGC
CACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTC
CAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3924#0      CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGT 60
consensus_3924#1      ------ATTTATTT-TCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTT 53
                            *    *   * *   ***  *****   * *  * * **      *     * *

consensus_3924#0      ACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAG-AGGCGAAGAGAACAGTGTGTGTGCGT 119
consensus_3924#1      TTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGT 113
                        *  *  ** * **   *** ** *  *   * * ***       *  ***  *   **

consensus_3924#0      GTGTTTCCAAATCCAAA-----TCAATTGCAGCTGCTTGG---AATTGGCCTGCAA-TTG 170
consensus_3924#1      CCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTG 173
                         **      * *        *** ** *     *** *   *  *   ** *** ***

consensus_3924#0      CTGCACCGACTGTATGCACTT-TGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTT 229
consensus_3924#1      CGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATT 233
                      *     ***    ** * *   * * ***   *   *****    *     *  *** **

consensus_3924#0      CGCACGAGACGTGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGC 289
consensus_3924#1      CATTCAGTCCGTTGCGAGC----ATTCCTCCGTT-----CTCCGTCTGACCGTTGGTTCG 284
                      *   *    ***    * *    ** *** * *      * ****  * **** * **  

consensus_3924#0      TGTGCATGGGAACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGG 349
consensus_3924#1      TGT-CGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGA 343
                      *** * **    * *    ***  *   *****       **            *  ** 

consensus_3924#0      AGAAGGTGTGTAGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCAT 409
consensus_3924#1      CGTGCGCGCGTTCGCACACAGACCACTACCACCACCACCATCAGC---CTGTGGGCTCGC 400
                       *   * * **  *       * *  * *   *  *    * *     * *** *  *  

consensus_3924#0      TGACTGTGTAGAAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACA 469
consensus_3924#1      CGAGGGTCTAGTAGTCTGTTTTTGTG------------TGTTTCGAACG--TCGAACGCA 446
                       **  ** *** *    *   * *                ******  *  * ***  **

consensus_3924#0      ACGGGCTTTTCAACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGT 529
consensus_3924#1      ACCGTCCTC-CAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAA 505
                      ** * * *  **  *    **  * *** *      ** *   *    ***   * *   

consensus_3924#0      ATATGTGTATGT----GTGTGTGCGTTTGTGCGTCCGGTTCCA-TCCGTGTTTTCTGTGG 584
consensus_3924#1      AGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTCCAATCCAAATCAATTGCAGCTGCTT 565
                      * * * * *       ******* * *****  ***  * * * **  *     ***   

consensus_3924#0      TGATCGCGTCCGACAGTGATCCCC----------- 608
consensus_3924#1      GGAATTGGCCTGCAATTGCTGCACCGACTGTATGC 600
                       **    * * *  * ** * * *