|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1031 fasta sequence
[CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCCGGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAAAACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACAGGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGAAAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACATCAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAAGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACAAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCAGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTATCCAATTATCG]
[+] EMBL BM644979 [CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCCGGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAAAACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACAGGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGAAAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACATCAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAAGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCC ]
[+] EMBL BM599729 [ ccgGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGAGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACATACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGAT AAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAGCATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACAAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCAGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTATCCAATTATCG]
consensusID : consensus_3943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTACAGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGCTTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAGAGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACCGTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGTGATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATTTGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACAGCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT]
[+] EMBL BM604963 [CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTACAGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGCTTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAGAGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACCGTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGTGATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATTTGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACAGCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3943#0 CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCC 60
consensus_3943#1 ------------------------------------------------------------
consensus_3943#0 GGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAA 120
consensus_3943#1 ------------------------------------------------------------
consensus_3943#0 AACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACA 180
consensus_3943#1 ------------------------------------------------------------
consensus_3943#0 GGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGA 240
consensus_3943#1 ------------------------------------------------------------
consensus_3943#0 AAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACAT 300
consensus_3943#1 ------------------------------------------------------CCGCGT 6
* * *
consensus_3943#0 CAAGGCGGCCCCACGAATCGAAGCGA-AGAATGATGCGTACATACCGAAGGGTGGCGACA 359
consensus_3943#1 GAATGTGTTTC--TGGATCAATTTCACAGCTCGATG-GAACGGA--AGAATGCAGCTACA 61
** * * * * *** * * ** **** * ** * * * ** ***
consensus_3943#0 AGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATA 419
consensus_3943#1 GTAGCAACGCCGCC--GAAGCCGAGCTGGAGTAGAGAGCTTTG--CTAAATC-----ATA 112
* * * * * **** * **** * * *** * ** ***
consensus_3943#0 ATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTA 479
consensus_3943#1 ATACTGGCTTATATCTACAC-------ACAATCACATACACACACACACACTACTCTTGA 165
** ** ** * * * **** * *** * * ** *** *
consensus_3943#0 AGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTG 539
consensus_3943#1 TCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCAC----TGTCCAACGCCACCGGTA 221
* * * * * ** ** ** *** ** ****
consensus_3943#0 GTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCAC 599
consensus_3943#1 GTGA-------ATTCTACCCCCGCAG--AGAAAGAGTGTCGTTTGGGCAGAGCAG-TCGA 271
**** ** *** ** * ** *** * * ** * *** * * **
consensus_3943#0 TGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAG 659
consensus_3943#1 TCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATC--GATTTGTTCGTTT 329
* * * ***** * ** * ** *** *
consensus_3943#0 TATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTAC 719
consensus_3943#1 CATTTCGA----ATTGTAGGT--GGCTCTGCTCAACCGTTGTTC-TAGAAGAG--GAAAA 380
** * * **** * * * ** ** * ** ** ** ** *
consensus_3943#0 AAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGC 779
consensus_3943#1 GAATGTTGTTTGCGCGTGTCTTTATATGT--TTGTGTGAT---------GTGATGTTTGT 429
*** * ** * * * ** ** *** * *
consensus_3943#0 AGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGT 839
consensus_3943#1 TTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTAC----CCCAAATTTGTAT 485
* ** * ** * ** * *** * * * ** * * *
consensus_3943#0 ACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAG 899
consensus_3943#1 AT-TTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACT 544
* * * **** * * * ** ** * * *** * * *
consensus_3943#0 ATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCC 959
consensus_3943#1 TTATAGGT--TAATTTTGGTTTCTTTGTTTCTTTCTTTA-CTTCTTTTCTTTTTTTACAG 601
* *** * * * ** * ****** ** * ** * * * ** *
consensus_3943#0 CCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTT 1019
consensus_3943#1 CCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT------------ 649
************************************************
consensus_3943#0 ATCCAATTATCG 1031
consensus_3943#1 ------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||