cluster # 3946

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Anopheles gambiae
cluster # 3946 cluster # 3946 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3946#0 length = 753 sequences # 1

consensus_3946#1 length = 684 sequences # 1
consensus_3946#2 length = 556 sequences # 1

consensusID : consensus_3946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 753
fasta sequence

                              [CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAACAACGCACATACACACACGCGCGCGCGCGCAGGAAAACAACATGCTGCAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCTCTTGGCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAACAAAACAAAATATTCAATTTGGTATTTGCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATATGCTTACCGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGTATGTCGGTTTCCCGTCCACTTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAAAACGAAAAAAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGAACACACACACACACACACACACTCGTTGTTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTNNTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTTTTGTGTCGTATNAGTTTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAGACGAAAAACACAGTCAGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT]

[+] EMBL AL931987             [CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAACAACGCACATACACACACGCGCGCGCGCGCAGGAAAACAACATGCTGCAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCTCTTGGCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAACAAAACAAAATATTCAATTTGGTATTTGCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATATGCTTACCGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGTATGTCGGTTTCCCGTCCACTTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAAAACGAAAAAAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGAACACACACACACACACACACACTCGTTGTTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTNNTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTTTTGTGTCGTATNAGTTTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAGACGAAAAACACAGTCAGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT]




>consensus_3946#0
CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGAT
TTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAA
CAACGCGTTCAAGCGCAAACAACGCACATACACACACGCGCGCGCGCGCAGGAAAACAAC
ATGCTGCAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCTCTTG
GCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAACAAAACAAAATATTC
AATTTGGTATTTGCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATATGCTTAC
CGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGTATGTCG
GTTTCCCGTCCACTTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAAAACGAAAA
AAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGAACACACAC
ACACACACACACACTCGTTGTTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTN
NTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTTTTGTGTCGTATNAGT
TTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAGACGAAAAACACAGTC
AGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT

consensusID : consensus_3946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAGATGGTGGTGGAGGAGCAGGACGATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAAGCCGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCCTTACCACCAGCACCACTTCCATCGGCACCACCGGCAGCAGGAAGAGACGATCACCACCAGCAGCAACAGCAGCAGCCCGCCGATTCTGATCGACGACGAGCCGTGCCGGGACTGGCTGACGGCTGGCGTAGGCTCAGCGCCGCCACTGCCCGTCGGGTACGCCGCCGGTGGCATCAAGCGCCGCCCGGACAGCCAGCGCCGTAGCTCGGCCAAGCGCAAGCTGGCGGAGCAGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTGGTGACAGTCACCACCACCCCACCGATCGGAAGCGTCGCACCGCCAGCAGCGACTCGATGGAGTAGCCTTCCCAGCGCGCAGTGTAATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAATGCTGCGCCGAACAAGGGGGAAAACACGAGCTAGATTTAACAGCAACAATTGTTAAGAAAAATGGGAGGGGGAAACAAAGGGAAAACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGGCAGCGCAGCGACAACAGAGCA]

[+] EMBL BM630569             [CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAGATGGTGGTGGAGGAGCAGGACGATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAAGCCGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCCTTACCACCAGCACCACTTCCATCGGCACCACCGGCAGCAGGAAGAGACGATCACCACCAGCAGCAACAGCAGCAGCCCGCCGATTCTGATCGACGACGAGCCGTGCCGGGACTGGCTGACGGCTGGCGTAGGCTCAGCGCCGCCACTGCCCGTCGGGTACGCCGCCGGTGGCATCAAGCGCCGCCCGGACAGCCAGCGCCGTAGCTCGGCCAAGCGCAAGCTGGCGGAGCAGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTGGTGACAGTCACCACCACCCCACCGATCGGAAGCGTCGCACCGCCAGCAGCGACTCGATGGAGTAGCCTTCCCAGCGCGCAGTGTAATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAATGCTGCGCCGAACAAGGGGGAAAACACGAGCTAGATTTAACAGCAACAATTGTTAAGAAAAATGGGAGGGGGAAACAAAGGGAAAACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGGCAGCGCAGCGACAACAGAGCA]




>consensus_3946#1
CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAGATGGTGGTGGAGGAGCAGGACG
ATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAAGCCGCAGAGCAGCAGCAGCAGC
AGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCCTTACCACCAGCACCACTTCCATC
GGCACCACCGGCAGCAGGAAGAGACGATCACCACCAGCAGCAACAGCAGCAGCCCGCCGA
TTCTGATCGACGACGAGCCGTGCCGGGACTGGCTGACGGCTGGCGTAGGCTCAGCGCCGC
CACTGCCCGTCGGGTACGCCGCCGGTGGCATCAAGCGCCGCCCGGACAGCCAGCGCCGTA
GCTCGGCCAAGCGCAAGCTGGCGGAGCAGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTG
GTGACAGTCACCACCACCCCACCGATCGGAAGCGTCGCACCGCCAGCAGCGACTCGATGG
AGTAGCCTTCCCAGCGCGCAGTGTAATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAA
TGCTGCGCCGAACAAGGGGGAAAACACGAGCTAGATTTAACAGCAACAATTGTTAAGAAA
AATGGGAGGGGGAAACAAAGGGAAAACTTTTTAAAAGTACCGCACTAATCGATTTGCAAG
TGGCAGCGCAGCGACAACAGAGCA

consensusID : consensus_3946#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [CCCCAGGTTTGTTAAGAAAAATGGGAGGGGCGCAAACAAGNGAANACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGTGCAGCGCAGCAACAACAGAGCACACACACAGAGAGAGCGTGCGTGATTTGCTCGGTTTTACAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATCCATCCACGCGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTNTATTGCTGCTGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTAGTGATTTTCTTTAAACGTTCTTCATATTGTTAATCTAATCCCTTCTTTGGCGGGGAGANTGAACAGGTCCAACAAAGAGGCAGGCAGCAGCAAGGCAGCACCAATTTCGCTAGCCAAACAAGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAA]

[+] EMBL AL696454             [CCCCAGGTTTGTTAAGAAAAATGGGAGGGGCGCAAACAAGNGAANACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGTGCAGCGCAGCAACAACAGAGCACACACACAGAGAGAGCGTGCGTGATTTGCTCGGTTTTACAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATCCATCCACGCGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTNTATTGCTGCTGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTAGTGATTTTCTTTAAACGTTCTTCATATTGTTAATCTAATCCCTTCTTTGGCGGGGAGANTGAACAGGTCCAACAAAGAGGCAGGCAGCAGCAAGGCAGCACCAATTTCGCTAGCCAAACAAGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAA]




>consensus_3946#2
CCCCAGGTTTGTTAAGAAAAATGGGAGGGGCGCAAACAAGNGAANACTTTTTAAAAGTAC
CGCACTAATCGATTTGCAAGTGTGCAGCGCAGCAACAACAGAGCACACACACAGAGAGAG
CGTGCGTGATTTGCTCGGTTTTACAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATC
CATCCACGCGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTNTA
TTGCTGCTGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTA
GTGATTTTCTTTAAACGTTCTTCATATTGTTAATCTAATCCCTTCTTTGGCGGGGAGANT
GAACAGGTCCAACAAAGAGGCAGGCAGCAGCAAGGCAGCACCAATTTCGCTAGCCAAACA
AGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTAAC
CACACGCACACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTTCACGAACAA
CGCGTTCAAGCGCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3946#0      CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGAT 60
consensus_3946#2      ------------------------------------CCCCAGGTTTGTTAAGAAA---AA 21
consensus_3946#1      ----------------------CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAG 38
                                                               *       *  *     * 

consensus_3946#0      TTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAA 120
consensus_3946#2      TGGGAGGGGCGCAAACA-AGNGAANACTTTTTAAAAGTACCGCACTAATCGATTTGCAAG 80
consensus_3946#1      ATGGTGGTGGAGGAGCAGGACGATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAA 98
                                     **                    *      *           * * 

consensus_3946#0      CAACGCGTTCAAGCGCAAACAA-CGCACATACA-CACAC-GCGCGCGCGCGCAGGAAAAC 177
consensus_3946#2      TG-TGCAGCGCAGCAACAACAG-AGCACACACA-CAGA--GAGAGCGTGCGT-GATTTGC 134
consensus_3946#1      -GCCGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCC 157
                          **     ***   * **   ***    ** ** *  * * **  **         *

consensus_3946#0      AACATGCTG-CAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCT 236
consensus_3946#2      TCGGTTTTA-CAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATCCATCCACG----- 188
consensus_3946#1      TTACCACCAGCACCACTTCCATCGGCACCACCGGCAGCAGGAAGAGACGATCACC----- 212
                                **     *              *   * * * *    *            

consensus_3946#0      CTTGGCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAAC-AAAACAAAA 295
consensus_3946#2      CGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTN-TATTGCTGC 247
consensus_3946#1      ACCAGCAGCA-ACAGC--AGCAGCCCGCCGATTCTGATCGACGACGAGCCGTGCCGGGAC 269
                          ** **  ** **                                            

consensus_3946#0      TATTCAATTTGGTATTT-GCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATAT 354
consensus_3946#2      TGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTAGTGATTT 307
consensus_3946#1      TGGCTGACGGCTGGCGT--AGGCTCAGCGCCGCCACTGCCCGTCGGGTACGCCGCCGGTG 327
                      *     *         *         *              *   *       *      

consensus_3946#0      GCTTACCGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGT 414
consensus_3946#2      TCTTTAAACGTTCTTCATA---TTGTTAATCTAATCCCTTCTTTGGCGGGGAGANTGAAC 364
consensus_3946#1      GCATCAAGCGCCGCCCGGACAGCCAGCGCCGTAGCTCGGCCAAGCGCAAGCTGGCGGAGC 387
                       * *     *     *               **   *               *       

consensus_3946#0      ATGTCGGTTTCCCGTCCAC--TTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAA 472
consensus_3946#2      AGGTCCAACAAAGAGGCAG--GCAGCAGCAAG-GCA-GCACCAATTT--CGCTAGCCAAA 418
consensus_3946#1      AGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTGGTG-ACAGTCACCACCACCCCACCGAT 446
                      *   *           **         **    *    *            *    * * 

consensus_3946#0      AACGAAAAAAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGA 532
consensus_3946#2      CAAGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTA 478
consensus_3946#1      CGGAAGCGTCGCACCGCCAGCAG-CGACTCGATGGAGTAGCCTTCCCAGCGCGCAGTGTA 505
                          *       *     *   *   **              *                *

consensus_3946#0      AC-ACACACAC--ACACACACACACTCGTTGTTTACACTTTTCTGT-CACATTTTG---C 585
consensus_3946#2      ACCACACGCAC--ACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTT----C 532
consensus_3946#1      ATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAATGCTGCGCCGAACAAGGGGGAAAAC 565
                      *    *  **      *                 *         *  **          *

consensus_3946#0      ATTACTTTTCTTTTNNTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTT 645
consensus_3946#2      ACGAACAACGCGTTCAAGCGCAAA------------------------------------ 556
consensus_3946#1      ACGAGCTAGATTTAACAGCAACAATTGTTAAGAAAAATGGGAGGGGGAAACAAAGGGAAA 625
                      *  *        *    *     *                                    

consensus_3946#0      TTGTGTCGTATNAGTTTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAG 705
consensus_3946#2      ------------------------------------------------------------
consensus_3946#1      ACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGGCAGCGCAGCGACAACAGAGCA- 684
                                                                                  

consensus_3946#0      ACGAAAAACACAGTCAGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT 753
consensus_3946#2      ------------------------------------------------
consensus_3946#1      ------------------------------------------------