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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence
[AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCCGAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTTGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTCGCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGTTCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAANAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGAACNCNGNGG]
[+] EMBL AL696457 [AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCCGAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTTGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTCGCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGTTCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAANAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGAACNCNGNGG]
consensusID : consensus_3947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 746 fasta sequence
[ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNCGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGCCTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTCCGTGCGTGGACCGTACN]
[+] EMBL BX619429 [ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNCGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGCCTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGG ]
[+] EMBL BX621138 [ CTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTAC GGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTG GCTAGACGATCCGGTAGTCATGACGCTCCCGAACGT GGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTCCGTGCGTGGACCGTACN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3947#0 AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACA 60
consensus_3947#1 ------------------------------------------------------------
consensus_3947#0 GGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCA 120
consensus_3947#1 ------------------------------------------------------------
consensus_3947#0 GCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCC 180
consensus_3947#1 ------------------------------------------------------------
consensus_3947#0 GAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCT 240
consensus_3947#1 ----------------ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAA---- 40
* * * * *** * *** * ** *
consensus_3947#0 TGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAAT-TTGGCCGCGAC 299
consensus_3947#1 -GCTGATTCGGGCCGGGTGTGTCTTGCTGGA--GGAAGATAACAGATCGCTGATGGCGAC 97
* * *** *** * * * ** * **** ** *** ** *****
consensus_3947#0 GTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGC 359
consensus_3947#1 ATCGATGGGGCGCATTTC----CTCGTACTATTACCTATCCCACATCACCATGCGTCA-- 151
* * * * ** * * * * * * *** ** ** *
consensus_3947#0 TGCCGTCGCTGA-ACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACG 418
consensus_3947#1 ---CTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGC-----TGCGCGCG 203
* * ***** *** * * ** * * * ** ** * **
consensus_3947#0 TGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCC 478
consensus_3947#1 ATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAAT 263
* * * * * * ** * ** * *** * *** ****
consensus_3947#0 GCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGC 538
consensus_3947#1 GCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCAC 323
** ** * **** * ** ** * ** * * ** * * ** *
consensus_3947#0 TCGC-TCAAACATTACACTGTC--ACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCC 595
consensus_3947#1 ACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNC--GCACAGACACCAAGTCGGTAC 381
* ** * * * ** * ** * * ** * * ** ** ** *
consensus_3947#0 TGAGTT--CCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNC 653
consensus_3947#1 TCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGC 441
* * * *** ** * *** * ** * * * *** * *
consensus_3947#0 TCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAA 713
consensus_3947#1 TT--GCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCG-CTGNG 498
* **** **** ** * * * * * * * ** * *
consensus_3947#0 NCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNN 773
consensus_3947#1 CTAGACGATCCGGTAGTCATGACG--CTCCCGNNCGTGGGAAGCCTATNATGCGGCT-AT 555
* * * * * * * *** **** * ** * ***
consensus_3947#0 CACTAAANAAACCACAGTGNANAC-CNATGACAAACACGAACAGGGATAAAAANAAAGAG 832
consensus_3947#1 CTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATG 615
* * * * * * * * ** * ** * * * * * *** *** *
consensus_3947#0 -GATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGC 891
consensus_3947#1 CAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAAT 675
* ** ** ** * ** * ** * * * ** *
consensus_3947#0 CAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGN 951
consensus_3947#1 TGAGCA---GATTTACAAGGTGATATGT---GAGCTGCCGTCGCTGAACGTGCAGATTTC 729
** ** *** ** * * ** ** *** * *
consensus_3947#0 ACAGGGGGAACNCNGNGG 969
consensus_3947#1 CGTGCGTGGACCGTACN- 746
* * * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||