cluster # 3954

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Anopheles gambiae
cluster # 3954 cluster # 3954 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3954#0 length = 692 sequences # 2

consensus_3954#1 length = 490 sequences # 1

consensusID : consensus_3954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [CCGCTTGTCTCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTGC---TTTTTGTGTGAAATAGGGGCTAAAAGATGATTCGTCGTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGC-AATTCTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCG-AGAAGCGCTTCGATCGCATGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGGTGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAAATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACCTGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCGATTATGCACTTTCACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCATTTAAGGAGCCGACCTTCATTCAGGCGGTCGGCTGGTCGATTGCCATGAGTGGTCGCGACATGGTCGGCATTGCCAAGACGGGCAGTGGCAAAACGCTGGCCTACATCTTGCCGGCCCTGGTGCACATCAGCAACCAGCCGCGGATCGCACGGGGCGACGGTCCCATCGCGCTCGTGCTGGCTCCGACGCGTGAGCTGGCCCAGCAGATCAAGCAGGTGTGTGACGATTTCGGGCG]

[+] EMBL BM628204             [CCGCTTGTCTCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTGC   TTTTTGTGTGAAATAGGGGCTAAAAGATGATTCGTCGTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGC AATTCTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCG AGAAGCGCTTCGATCGCATGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGGTGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAAATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACCTGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCGATTATGCACTTTCACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCATTTAAGGAGCCGACCTTCATTCAGGCGGTCGGCTGGTCGATTGCCATGAGTGGTCGCGACATGGTCGGCATTGCCAAGACGGGCAGTGGCAAAACGCTGGCCTACATCTTGCCGGCCCTGGTGCACATCAGCAACCAGCCGCGGATCGCACGGGGCGACGGTCCCATCGCGCTCGTGCTGGCTCCGACGCGTGAGCTGGCCCAGCAGATCAAGCAGGTGTGTGACGATTTCGGGCG]
[+] EMBL BM599441             [     ccgCTCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTGCTTGTTTTTGTGTGAAATAAGGGCTAAAAGATGATTCGTCGTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAAATTCTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCGAAGAAGCGCTTCGATCGCATGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGGTGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAAATTTCTTCC ACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACCTGGACAAGAACGA                                                                                                                                                                                                                                                                                                                                             ]




>consensus_3954#0
CCGCTTGTCTCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTG
CTTTTTGTGTGAAATAGGGGCTAAAAGATGATTCGTCGTGGAGGTCGCGACAGCCGCAGC
GCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAATTCTAGCTTGATGCGTCGCAACGAT
CGCAATGGTGGCCGCGTCGAGAAGCGCTTCGATCGCATGGAGCGCAACGGGGAAAACCTG
CGCAGCATCCGGTGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAAATTTCTTCCAACCC
GCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACCTGGACAAGAACGAG
ATTACGGTGTACGGGAAGGATGTGCCCGCCCCGATTATGCACTTTCACGAGAGTGGCTTT
CCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCATTTAAGGAGCCGACCTTCATTCAG
GCGGTCGGCTGGTCGATTGCCATGAGTGGTCGCGACATGGTCGGCATTGCCAAGACGGGC
AGTGGCAAAACGCTGGCCTACATCTTGCCGGCCCTGGTGCACATCAGCAACCAGCCGCGG
ATCGCACGGGGCGACGGTCCCATCGCGCTCGTGCTGGCTCCGACGCGTGAGCTGGCCCAG
CAGATCAAGCAGGTGTGTGACGATTTCGGGCG

consensusID : consensus_3954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [CCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTGTTTTTTGTGTGAAATAGGGGCTAAAAGATTTTGCCCCTGCCATTTCTCGTAGGATTCGTCGTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAATTCTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCGAGAAGCGCTTCGATCGCATGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGATGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAAATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACCTGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCAATTATGCACTTTCACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCGTTTAAGGAGCCAACCTTCAT]

[+] EMBL BM610080             [CCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTGTTTTTTGTGTGAAATAGGGGCTAAAAGATTTTGCCCCTGCCATTTCTCGTAGGATTCGTCGTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAATTCTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCGAGAAGCGCTTCGATCGCATGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGATGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAAATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACCTGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCAATTATGCACTTTCACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCGTTTAAGGAGCCAACCTTCAT]




>consensus_3954#1
CCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTGTTTTTTGTG
TGAAATAGGGGCTAAAAGATTTTGCCCCTGCCATTTCTCGTAGGATTCGTCGTGGAGGTC
GCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAATTCTAGCTTGA
TGCGTCGCAACGATCGCAATGGTGGCCGCGTCGAGAAGCGCTTCGATCGCATGGAGCGCA
ACGGGGAAAACCTGCGCAGCATCCGATGGGATCAGGTAAAGTTGGAAGCGTTTCAGAAAA
ATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGAACCAGTACC
TGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCAATTATGCACTTTC
ACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCGTTTAAGGAGC
CAACCTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3954#0      CCGCTTGTCTCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTG 60
consensus_3954#1      ---------CCGGGGCAGCCAGCTGTGCTTTCGATTTGCTACTCGCGCAATATTTCAGTG 51
                                **************************************************

consensus_3954#0      CTTTTTGTGTGAAATAGGGGCTAAAAGAT-----------------------GATTCGTC 97
consensus_3954#1      TTTTTTGTGTGAAATAGGGGCTAAAAGATTTTGCCCCTGCCATTTCTCGTAGGATTCGTC 111
                       ****************************                       ********

consensus_3954#0      GTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAATT 157
consensus_3954#1      GTGGAGGTCGCGACAGCCGCAGCGCTGAAAGGAGTAGCCGCAGTTTCGGAGGTGGCAATT 171
                      ************************************************************

consensus_3954#0      CTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCGAGAAGCGCTTCGATCGCA 217
consensus_3954#1      CTAGCTTGATGCGTCGCAACGATCGCAATGGTGGCCGCGTCGAGAAGCGCTTCGATCGCA 231
                      ************************************************************

consensus_3954#0      TGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGGTGGGATCAGGTAAAGTTGGAAGCGT 277
consensus_3954#1      TGGAGCGCAACGGGGAAAACCTGCGCAGCATCCGATGGGATCAGGTAAAGTTGGAAGCGT 291
                      ********************************** *************************

consensus_3954#0      TTCAGAAAAATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGA 337
consensus_3954#1      TTCAGAAAAATTTCTTCCAACCCGCTAGCAGCGTCCTGACTCGCTCGCGGGCCGAGGTGA 351
                      ************************************************************

consensus_3954#0      ACCAGTACCTGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCGATTA 397
consensus_3954#1      ACCAGTACCTGGACAAGAACGAGATTACGGTGTACGGGAAGGATGTGCCCGCCCCAATTA 411
                      ******************************************************* ****

consensus_3954#0      TGCACTTTCACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCAT 457
consensus_3954#1      TGCACTTTCACGAGAGTGGCTTTCCGCAGTACATGCTGGACGAGTTCCAGCGGCAGGCGT 471
                      ********************************************************** *

consensus_3954#0      TTAAGGAGCCGACCTTCATTCAGGCGGTCGGCTGGTCGATTGCCATGAGTGGTCGCGACA 517
consensus_3954#1      TTAAGGAGCCAACCTTCAT----------------------------------------- 490
                      ********** ********                                         

consensus_3954#0      TGGTCGGCATTGCCAAGACGGGCAGTGGCAAAACGCTGGCCTACATCTTGCCGGCCCTGG 577
consensus_3954#1      ------------------------------------------------------------
                                                                                  

consensus_3954#0      TGCACATCAGCAACCAGCCGCGGATCGCACGGGGCGACGGTCCCATCGCGCTCGTGCTGG 637
consensus_3954#1      ------------------------------------------------------------
                                                                                  

consensus_3954#0      CTCCGACGCGTGAGCTGGCCCAGCAGATCAAGCAGGTGTGTGACGATTTCGGGCG 692
consensus_3954#1      -------------------------------------------------------