cluster # 3956

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Anopheles gambiae
cluster # 3956 cluster # 3956 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3956#0 length = 531 sequences # 2

consensus_3956#1 length = 405 sequences # 1

consensusID : consensus_3956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAATTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAGCTTCCTTGGCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCGGGCATGCAAAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGTGTGTCTACTTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT]

[+] EMBL BM641086             [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAATTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAGCTTCCTTGGCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCGGGCATGCAAAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGTGTGTCTACTTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT]
[+] EMBL BM630459             [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCCTTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAATTTCTAACCAGGACGAATTATTACAAACAAAATGAATCACCTCGAATGATAGC                                                                                                                                                                                  ]




>consensus_3956#0
CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGATAAGATCATTATCACAAGCAGGAATTG
CGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTAAACTTAA
ACCAAGCCAAAGCGGAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGT
GTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAG
GCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACGTACAATAA
TTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAGCTTCCTTG
GCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCGGGCATGCA
AAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGTGTGTCTAC
TTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT

consensusID : consensus_3956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACAACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTAAAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAATGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG]

[+] EMBL AL696576             [GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACAACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTAAAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCAGGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAATGAACAAAAACAAAAAAGCTAAACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAGCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATAGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG]




>consensus_3956#1
GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACA
ACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTA
AAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCA
GGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAATGAACAAAAACAAAAAAGCTAA
ACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTAG
CACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAATA
GTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3956#0      ------------------------------------------------------------
consensus_3956#1      GAGGCAGATCGCCAGAGGTCATAAATATACGGATATTTGAAAAAGAAACAGTTTTGGACA 60
                                                                                  

consensus_3956#0      ------------------------------------------------------------
consensus_3956#1      ACCGAAAACAACGACCGAAGCGTTTCGTTAGCGTAGCTCGATCATCATAAAGGTAGCTTA 120
                                                                                  

consensus_3956#0      -----CCGCCCACGCGTCCGCCCACGCGTCCGG--TAAGATAAGATCATTATCACAAGCA 53
consensus_3956#1      AAAAAAGGGGAGGGATTAGGTGGGTAGATTAGGAGTAAGATAAGATCATTATCACAAGCA 180
                             *     *  *  *        *  **  *************************

consensus_3956#0      GGAATTGCGATCAGGGTGAACAAAAAAAAAAAACGCAACTGAACAAAAACAAAAAAGCTA 113
consensus_3956#1      GGAATTGCGATCAGGGTGAACAAAAAAAAAAAAAGCAA-TGAACAAAAACAAAAAAGCTA 239
                      ********************************* **** *********************

consensus_3956#0      AACTTAAACCAAGCCAAAGCGG-AGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTA 172
consensus_3956#1      AACTTAAACCAAGCCAAAGCGGCAGGGAAGGATATGTGCGAGGTGCAGCAAAGGCGCCTA 299
                      ********************** *************************************

consensus_3956#0      GCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAAT 232
consensus_3956#1      GCACACGTGTGGACGTGTTGCAGTGCGCGTGCGTCAAAGCCAGTAATAACGTTTAGTAAT 359
                      ************************************************************

consensus_3956#0      AGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACGATTTCCGATCGACG 292
consensus_3956#1      AGTGGAAGGCGGGATGCGTATCAATTGCGTTTTCCGATCAGTAACG-------------- 405
                      **********************************************              

consensus_3956#0      TACAATAATTTCTAACCAGGACGAATTATTACGAACAAAATGAATCACCTCGAATGATAG 352
consensus_3956#1      ------------------------------------------------------------
                                                                                  

consensus_3956#0      CTTCCTTGGCTATTTGTTTTTTTTTTTAACATTTTAAGAAAGAATTAAGAAAGACCGTCG 412
consensus_3956#1      ------------------------------------------------------------
                                                                                  

consensus_3956#0      GGCATGCAAAAGGCGAGTTTCATTGATCCACTATCCATTTCGTTGTGTTTTTGTATATGT 472
consensus_3956#1      ------------------------------------------------------------
                                                                                  

consensus_3956#0      GTGTCTACTTTCAAAAATGCCATCATGCGATGCTTTTCATATTTAAAATCCAGTTTATT 531
consensus_3956#1      -----------------------------------------------------------