cluster # 3965

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Anopheles gambiae
cluster # 3965 cluster # 3965 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3965#0 length = 711 sequences # 2

consensus_3965#1 length = 284 sequences # 1

consensusID : consensus_3965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 711
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCGCTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTTGTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACCGCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAACCCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAACCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCAGAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGAGGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGCACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAACACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG]

[+] EMBL BM630994             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCGCTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTTGTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACCGCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAACCCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAACCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCAGAAAGAAAGAAAAACGCAAAGTGAAGCA                                                                                                                                                                                                           ]
[+] EMBL BM598882             [                        CCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCGCTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTTGTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACCGCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAACCCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAACCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCAGAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGAGGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGCACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAACACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG]




>consensus_3965#0
CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCG
CTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTT
GTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGC
ACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCA
GCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACC
GCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAAC
CCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAA
CCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCA
GAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGA
GGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGC
ACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAAC
ACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG

consensusID : consensus_3965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [GTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTTGGCGGCAGCGTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGGCGGCCACATTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAAAACAACAACGAAGAAGCACCAACCAGCAGAACGCGACAGTGAAG]

[+] EMBL BX606539             [GTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTTGGCGGCAGCGTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGGCGGCCACATTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAAAACAACAACGAAGAAGCACCAACCAGCAGAACGCGACAGTGAAG]




>consensus_3965#1
GTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCA
TGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTTGGCGG
CAGCGTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGGCGGCCAC
ATTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAA
AACAACAACGAAGAAGCACCAACCAGCAGAACGCGACAGTGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3965#0      CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCG 60
consensus_3965#1      ------------------------------------------------------------
                                                                                  

consensus_3965#0      CTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTT 120
consensus_3965#1      ------------------------------------------------------------
                                                                                  

consensus_3965#0      GTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGC 180
consensus_3965#1      -----------------------------------------------------GTGCAGC 7
                                                                           *******

consensus_3965#0      ACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCA 240
consensus_3965#1      ACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCA 67
                      ************************************************************

consensus_3965#0      GCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACC 300
consensus_3965#1      GCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTT---GGCGGCAGC 124
                      ******************************  *          ****    *   *** *

consensus_3965#0      GCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAAC 360
consensus_3965#1      GTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGG---CGGCCACA 181
                      *    *  ****  *      *  ** ** ***  *        *****    * * *  

consensus_3965#0      CCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAA 420
consensus_3965#1      TTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAAA 241
                        **       ***  *    * *  *    * *   *       **         * **

consensus_3965#0      CCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCA 480
consensus_3965#1      ACAACAACGAAGAAGCACCAAC--CAGCAGAACG-CGACAGTGAAG-------------- 284
                       *   ** *  * *   **  *   **** ***  * ***   *                

consensus_3965#0      GAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGA 540
consensus_3965#1      ------------------------------------------------------------
                                                                                  

consensus_3965#0      GGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGC 600
consensus_3965#1      ------------------------------------------------------------
                                                                                  

consensus_3965#0      ACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAAC 660
consensus_3965#1      ------------------------------------------------------------
                                                                                  

consensus_3965#0      ACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG 711
consensus_3965#1      ---------------------------------------------------