cluster # 3966

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Anopheles gambiae
cluster # 3966 cluster # 3966 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3966#0 length = 760 sequences # 1

consensus_3966#1 length = 615 sequences # 2

consensusID : consensus_3966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence

                              [AGCAGATCGCCCGAGGTGCTAGATATAATTATCTTTCAAAGCTCATACAAGGAGCTGTATCGTTTCGGGACACGGAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACCAGTGAGAGTATTGTCAAGATTAATCCCCTGCTCAACTCAGGAGTTTACTAATAAGAAAATCCGGCAAAACAAACACTCATGACAACTTGGCGGCAAGGATCTTATATTACGTCATTTTGCTTTAGTGAAATACACTTCACGTTCATGTGAGTCTTTNGTGACNTATATGTAGGTGACCAAGTCAATTTAAGCCGCGACATCACACTGTTTACAGCGATCCGATAAACACGTGTAAACGGCCGCTACTCTCTTGACTGNGGCAGACCACGTGTACAAAACCTTGCTTGCAAGTTCATTCAACCATAACCGGACACAAAGCGGTTACAAACCTTCTCCTNTAGCGTATTAGCGTATCCAATCGCAATTGATTAACTTTATCTAGGGTCAATGAGATTAGGAAACAAGTCTCCAAGTTTCAACACTTGCTATTCATTTACAGAATTACTTCCACTATTCTCTCTCTCATTCGTATCTATTGCCGTCATTTGCNNTATATTTAACCAAAACGTTAATACCCATTTTAATCTTACAGGGTTACGGAATCATATGAATAGTTCTATAAGTTCACGAGGANATGATTCAAATGACACTATTCAGAATCGTACACGCACCATGGTCTTTGCCATCATAC]

[+] EMBL AL696926             [AGCAGATCGCCCGAGGTGCTAGATATAATTATCTTTCAAAGCTCATACAAGGAGCTGTATCGTTTCGGGACACGGAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACCAGTGAGAGTATTGTCAAGATTAATCCCCTGCTCAACTCAGGAGTTTACTAATAAGAAAATCCGGCAAAACAAACACTCATGACAACTTGGCGGCAAGGATCTTATATTACGTCATTTTGCTTTAGTGAAATACACTTCACGTTCATGTGAGTCTTTNGTGACNTATATGTAGGTGACCAAGTCAATTTAAGCCGCGACATCACACTGTTTACAGCGATCCGATAAACACGTGTAAACGGCCGCTACTCTCTTGACTGNGGCAGACCACGTGTACAAAACCTTGCTTGCAAGTTCATTCAACCATAACCGGACACAAAGCGGTTACAAACCTTCTCCTNTAGCGTATTAGCGTATCCAATCGCAATTGATTAACTTTATCTAGGGTCAATGAGATTAGGAAACAAGTCTCCAAGTTTCAACACTTGCTATTCATTTACAGAATTACTTCCACTATTCTCTCTCTCATTCGTATCTATTGCCGTCATTTGCNNTATATTTAACCAAAACGTTAATACCCATTTTAATCTTACAGGGTTACGGAATCATATGAATAGTTCTATAAGTTCACGAGGANATGATTCAAATGACACTATTCAGAATCGTACACGCACCATGGTCTTTGCCATCATAC]




>consensus_3966#0
AGCAGATCGCCCGAGGTGCTAGATATAATTATCTTTCAAAGCTCATACAAGGAGCTGTAT
CGTTTCGGGACACGGAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACG
AGCACAACCAGTGAGAGTATTGTCAAGATTAATCCCCTGCTCAACTCAGGAGTTTACTAA
TAAGAAAATCCGGCAAAACAAACACTCATGACAACTTGGCGGCAAGGATCTTATATTACG
TCATTTTGCTTTAGTGAAATACACTTCACGTTCATGTGAGTCTTTNGTGACNTATATGTA
GGTGACCAAGTCAATTTAAGCCGCGACATCACACTGTTTACAGCGATCCGATAAACACGT
GTAAACGGCCGCTACTCTCTTGACTGNGGCAGACCACGTGTACAAAACCTTGCTTGCAAG
TTCATTCAACCATAACCGGACACAAAGCGGTTACAAACCTTCTCCTNTAGCGTATTAGCG
TATCCAATCGCAATTGATTAACTTTATCTAGGGTCAATGAGATTAGGAAACAAGTCTCCA
AGTTTCAACACTTGCTATTCATTTACAGAATTACTTCCACTATTCTCTCTCTCATTCGTA
TCTATTGCCGTCATTTGCNNTATATTTAACCAAAACGTTAATACCCATTTTAATCTTACA
GGGTTACGGAATCATATGAATAGTTCTATAAGTTCACGAGGANATGATTCAAATGACACT
ATTCAGAATCGTACACGCACCATGGTCTTTGCCATCATAC

consensusID : consensus_3966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 615
fasta sequence

                              [CCGGAGAAATTTCTAGGAAAGATTTCACCAAAAACAGCTCCCTGATCGTCTTCATCATGAGCCACGGAAGTGCAAACGATACAATTATGGCAAAGGATGGACAGTTCTACTCGTTTCAAGATGATGTAGTGGAGTACTGCACCAGTAACCGCACTTTAAACGATAAACCCAAACTATTTGTTCTGCAAGCTTGTCGAGGGGATGCGACCATGGTGGCCGATGC-GACACCCTCGATGAGCTACAAAGGCGATATAATTATCTTTCAAAGCTCATACCAAGGAGCTGTATCGTTTCGGGACACGCAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACAGTGAGAGTATTGTCAAGATTAATCCCCTGCTCAATCAGGAGTTTACTAATAAGAAAATCCGGCAAACACCAACACTCATGACAACCTTGCGGAAGGATCTTATATTACGTCATTTGCTTTAGTGAAATACACTTCACGTTATGTGAGTCTTTGTGACGTATTGTGGTGGCATTCTGAAAGTCATTTAAGCCGCGACATCACACTGTTACAGCGATCCGATAAAGTGTAACGCGTATTTTATGGCAGACAGTGTGGAAA]

[+] EMBL BM605403             [CCGGAGAAATTTCTAGGAAAGATTTCACCAAAAACAGCTCCCTGATCGTCTTCATCATGAGCCACGGAAGTGCAAACGATACAATTATGGCAAAGGATGGACAGTTCTACTCGTTTCAAGATGATGTAGTGGAGTACTGCACCAGTAACCGCACTTTAAACGATAAACCCAAACTATTTGTTCTGCAAGCTTGTCGAGGGGATGCGACCATGGTGGCCGATGC GACACCCTCGATGAGCTACAAAGGCGATATAATTATCTTTCAAAGCTCATACCAAGGAGCTGTATCGTTTCGGGACACGCAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACAGTGAGAGTATTGTCAAGATTAATCCCCTGCTCAATCAGGAGTTTACTAATAAGAAAATCCGGCAAACACCAACACTCATGACAACCTTGCGGAAGGATCTTATATTACGTCATTTGCTTTAGTGAAATACACTTCACGTTATGTGAGTCTTTGTGACGTATTGTGGTGGCATTCTGAAAGTCATTTAAGCCGCGACATCACACTGTTACAGCGATCCGATAAAGTGTAACGCGTATTTTATGGCAGACAGTGTGGAAA]
[+] EMBL BM582448             [                                                                                                                    ccgGATGATGTAGTGGAGTACTGCACCAGTAACCGCACTTTAAACGATAAACCCAAACTATTTGTTCTGCAAGCTTGTCTAGGGGATGCGACCATGGAGGCCGATGCGGACACCCTCGATGAGCTACAAAGGCGATATAATTATCTTTCAAAGCTCATACCAAGGAGCTGTATCGTTTCGGGACACGCAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACAGTGAGAGTATTGTCAAGATTAATCCCCTGCTCAATCAGGAGTTTACTAATAAGAAAATCCGGCAAACACCAACACTCATGACAACCTTGCGGAAGGATCTTATATTACGTCATTTGCTTTAGTGAAATACACTTCACGTTATGTGAGTCTTTGTGACGTATTGTGGTGGCATTCTGAAAGGCATTTAAGCCGCGACATCACACTGTTACAGCGATCCGATAAAGTGTAACGCGTATTTT                   ]




>consensus_3966#1
CCGGAGAAATTTCTAGGAAAGATTTCACCAAAAACAGCTCCCTGATCGTCTTCATCATGA
GCCACGGAAGTGCAAACGATACAATTATGGCAAAGGATGGACAGTTCTACTCGTTTCAAG
ATGATGTAGTGGAGTACTGCACCAGTAACCGCACTTTAAACGATAAACCCAAACTATTTG
TTCTGCAAGCTTGTCGAGGGGATGCGACCATGGTGGCCGATGCGACACCCTCGATGAGCT
ACAAAGGCGATATAATTATCTTTCAAAGCTCATACCAAGGAGCTGTATCGTTTCGGGACA
CGCAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACAGTG
AGAGTATTGTCAAGATTAATCCCCTGCTCAATCAGGAGTTTACTAATAAGAAAATCCGGC
AAACACCAACACTCATGACAACCTTGCGGAAGGATCTTATATTACGTCATTTGCTTTAGT
GAAATACACTTCACGTTATGTGAGTCTTTGTGACGTATTGTGGTGGCATTCTGAAAGTCA
TTTAAGCCGCGACATCACACTGTTACAGCGATCCGATAAAGTGTAACGCGTATTTTATGG
CAGACAGTGTGGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3966#0      ------------------------------------------------------------
consensus_3966#1      CCGGAGAAATTTCTAGGAAAGATTTCACCAAAAACAGCTCCCTGATCGTCTTCATCATGA 60
                                                                                  

consensus_3966#0      ------------------------------------------------------------
consensus_3966#1      GCCACGGAAGTGCAAACGATACAATTATGGCAAAGGATGGACAGTTCTACTCGTTTCAAG 120
                                                                                  

consensus_3966#0      ------------------------------------------------------------
consensus_3966#1      ATGATGTAGTGGAGTACTGCACCAGTAACCGCACTTTAAACGATAAACCCAAACTATTTG 180
                                                                                  

consensus_3966#0      ----------------------------------------AGCAGATCGCCCGAGGTGCT 20
consensus_3966#1      TTCTGCAAGCTTGTCGAGGGGATGCGACCATGGTGGCCGATGCGACACCCTCGATGAGCT 240
                                                               **    * * *** * ***

consensus_3966#0      A-------GATATAATTATCTTTCAAAGCTCATAC-AAGGAGCTGTATCGTTTCGGGACA 72
consensus_3966#1      ACAAAGGCGATATAATTATCTTTCAAAGCTCATACCAAGGAGCTGTATCGTTTCGGGACA 300
                      *       *************************** ************************

consensus_3966#0      CGGAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAACCAGT 132
consensus_3966#1      CGCAAAGCGGTAGCTTTTTTATGCAAGCCTTCCTACGATTGGCGCACGAGCACAAC-AGT 359
                      ** ***************************************************** ***

consensus_3966#0      GAGAGTATTGTCAAGATTAATCCCCTGCTCAACTCAGGAGTTTACTAATAAGAAAATCCG 192
consensus_3966#1      GAGAGTATTGTCAAGATTAATCCCCTGCTCAA-TCAGGAGTTTACTAATAAGAAAATCCG 418
                      ******************************** ***************************

consensus_3966#0      GCAAA-ACAAACACTCATGACAACTTGGCGGCAAGGATCTTATATTACGTCATTTTGCTT 251
consensus_3966#1      GCAAACACCAACACTCATGACAACCTTGCGG-AAGGATCTTATATTACGTCATTT-GCTT 476
                      ***** ** *************** * **** *********************** ****

consensus_3966#0      TAGTGAAATACACTTCACGTTCATGTGAGTCTTTNGTGACNTAT-ATGTAGGTGACC--A 308
consensus_3966#1      TAGTGAAATACACTTCACGTT-ATGTGAGTCTTTG-TGACGTATTGTGGTGGCATTCTGA 534
                      ********************* ************  **** ***  **  **    *  *

consensus_3966#0      AGTCAATTTAAGCCGCGACATCACACTGTTTACAGCGATCCGATAAACACGTGTAAACGG 368
consensus_3966#1      AAGTCATTTAAGCCGCGACATCACACTGTT-ACAGCGATCCGATAAA---GTGTAA---- 586
                      *    ************************* ****************   ******    

consensus_3966#0      CCGCTACTCTCTTGACTGNGGCAGACCACGTGTACAAAACCTTGCTTGCAAGTTCATTCA 428
consensus_3966#1      -CGCGTATTT------TATGGCAGACAGTGTGGAAA------------------------ 615
                       ***   * *      *  *******   *** * *                        

consensus_3966#0      ACCATAACCGGACACAAAGCGGTTACAAACCTTCTCCTNTAGCGTATTAGCGTATCCAAT 488
consensus_3966#1      ------------------------------------------------------------
                                                                                  

consensus_3966#0      CGCAATTGATTAACTTTATCTAGGGTCAATGAGATTAGGAAACAAGTCTCCAAGTTTCAA 548
consensus_3966#1      ------------------------------------------------------------
                                                                                  

consensus_3966#0      CACTTGCTATTCATTTACAGAATTACTTCCACTATTCTCTCTCTCATTCGTATCTATTGC 608
consensus_3966#1      ------------------------------------------------------------
                                                                                  

consensus_3966#0      CGTCATTTGCNNTATATTTAACCAAAACGTTAATACCCATTTTAATCTTACAGGGTTACG 668
consensus_3966#1      ------------------------------------------------------------
                                                                                  

consensus_3966#0      GAATCATATGAATAGTTCTATAAGTTCACGAGGANATGATTCAAATGACACTATTCAGAA 728
consensus_3966#1      ------------------------------------------------------------
                                                                                  

consensus_3966#0      TCGTACACGCACCATGGTCTTTGCCATCATAC 760
consensus_3966#1      --------------------------------