cluster # 399

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Anopheles gambiae
cluster # 399 cluster # 399 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_399#0 length = 668 sequences # 1

consensus_399#1 length = 340 sequences # 1

consensusID : consensus_399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCAGAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAAACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAAGCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGGAGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAATCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGACGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACCAATGGATCGAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGGATGTATAGCCGGCGCTGGCTAGTACTGGCCATCTTCGTGATGTATTCCGCCTCGAATGCGCTGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGATACTACAACATCACCAGCACCTGGGTCGACTGGACGTCGATGATATTCATGATCCTGTACATTCCGCTCATCTTTCCGGCCAGC]

[+] EMBL BM652837             [CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCAGAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAAACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAAGCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGGAGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAATCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGACGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACCAATGGATCGAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGGATGTATAGCCGGCGCTGGCTAGTACTGGCCATCTTCGTGATGTATTCCGCCTCGAATGCGCTGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGATACTACAACATCACCAGCACCTGGGTCGACTGGACGTCGATGATATTCATGATCCTGTACATTCCGCTCATCTTTCCGGCCAGC]




>consensus_399#0
CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCA
GAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAA
ACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAA
GCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGG
AGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAA
TCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGA
CGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGG
CAACCAATGGATCGAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGGA
TGTATAGCCGGCGCTGGCTAGTACTGGCCATCTTCGTGATGTATTCCGCCTCGAATGCGC
TGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGATACTACAACATCACCA
GCACCTGGGTCGACTGGACGTCGATGATATTCATGATCCTGTACATTCCGCTCATCTTTC
CGGCCAGC

consensusID : consensus_399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [TGAGGTTCTGACGCGTACATTCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGGATGTACAGCGGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATGNGCTGGAGTGGATCCAGTACAGATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGAATACTACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATTCCCTGTGGNTTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG]

[+] EMBL AL931884             [TGAGGTTCTGACGCGTACATTCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGGATGTACAGCGGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATGNGCTGGAGTGGATCCAGTACAGATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGAATACTACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATTCCCTGTGGNTTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG]




>consensus_399#1
TGAGGTTCTGACGCGTACATTCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAA
CTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGGATG
TACAGCGGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATGNGCT
GGAGTGGATCCAGTACAGATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGAATACT
ACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATTCCCTGTGGN
TTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_399#0      CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCA 60
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      GAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAA 120
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      ACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAA 180
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      GCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGG 240
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      AGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAA 300
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      TCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGA 360
consensus_399#1      ---------------------------------------------------------TGA 3
                                                                              ***

consensus_399#0      CGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGG 420
consensus_399#1      GGTT-----CTGACGCGTACAT-TCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGG 57
                      * *     *************  ************************************

consensus_399#0      CAACCAATGGATC-GAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGG 479
consensus_399#1      CAACTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGG 117
                     **** *** **** ***** ************* *** *****    *************

consensus_399#0      ATGTATAGCCGGCGCTGGCTAGTAC-TGGCCATCT-TCGTGATGTATTCCGCCTCGAATG 537
consensus_399#1      ATGTACAGC-GGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATG 176
                     ***** *** ** ******* ** * *** ***** ***************     ****

consensus_399#0      CGCTGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGA------------- 584
consensus_399#1      NGCTGGAGTGGATCCAGTACAG-ATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGA 235
                      **** **************** ******   *****  ** ** *              

consensus_399#0      -TACTACAACATCACC----AGCACCTGGGTCGACTGGACGTCGATGATATTCATGATCC 639
consensus_399#1      ATACTACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATT-CCC 294
                      ******     *  *    ***    * * *   *  *    *  *  **  **   **

consensus_399#0      TGTACATTCCGCTCATCTTTCCGGCCAGC----------------- 668
consensus_399#1      TGTGGNTTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG 340
                     ***   ****    *   * *  *  **