cluster # 4005

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Anopheles gambiae
cluster # 4005 cluster # 4005 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4005#0 length = 933 sequences # 2

consensus_4005#1 length = 277 sequences # 1

consensusID : consensus_4005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 933
fasta sequence

                              [CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAAGGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGTACAACCCGCCAGATCATGATGTGGTCGCGATGGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGGCGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGGGTCAACCGCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGGCGAAGGCGAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCAATGCACCGGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCGGGCCCCGAAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA]

[+] EMBL BM618907             [CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAAGGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGTACAACCCGCCAGATCATGATGTGGTCGCGATGGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGGCGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAAT                                                                                                                                                                                                                                          ]
[+] EMBL BM597323             [                                                                                                                                                                                                                                                                                                     cCGCGATGGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGGCGGTGCGGCCGGCGGGGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGGGTCAACCGCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGGCGAAGGCGAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCAATGCACCGGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCGGGCCCCGAAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA]




>consensus_4005#0
CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAA
GGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGC
GGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCAC
GGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGT
TCGGTTAATATTCACCAATTGCTACAAGTACAACCCGCCAGATCATGATGTGGTCGCGAT
GGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGT
AAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTC
GAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCT
CGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCT
GAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGG
CGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCT
CAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGGGTCAACC
GCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGGCGAAGGC
GAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCAATGCACC
GGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCGGGCCCCG
AAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA

consensusID : consensus_4005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [CAGAAGCTCAGGCAGAATCGCCACGAGGTCANCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCGCAAGGATCATGATGTGGNTCGCNGGATGGGGCCGGAA]

[+] EMBL BX466540             [CAGAAGCTCAGGCAGAATCGCCACGAGGTCANCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCGCAAGGATCATGATGTGGNTCGCNGGATGGGGCCGGAA]




>consensus_4005#1
CAGAAGCTCAGGCAGAATCGCCACGAGGTCANCCAAGAAGCATTCGGGTTACGCCTGGCC
ATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAA
AAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGC
GCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCG
CAAGGATCATGATGTGGNTCGCNGGATGGGGCCGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4005#0      CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAA 60
consensus_4005#1      ------------------------------------CAGAAGCTCAGGCAGAATCGCCAC 24
                                                          **     *       ****   * 

consensus_4005#0      GGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGC 120
consensus_4005#1      GAGGTCAN---CCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGC 81
                      *  *       *************************************************

consensus_4005#0      GGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCAC 180
consensus_4005#1      GGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCAC 141
                      ************************************************************

consensus_4005#0      GGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGT 240
consensus_4005#1      GGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGT 201
                      ************************************************************

consensus_4005#0      TCGGTTAATATTCACCAATTGCTACAAG-TACAACC-CGCCAG-ATCATGATGTGGT--- 294
consensus_4005#1      TCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCGCAAGGATCATGATGTGGNTCG 261
                      **************************** ******* *** ** ************    

consensus_4005#0      CGCGATGGG-CCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACG 353
consensus_4005#1      CNGGATGGGGCCGGAA-------------------------------------------- 277
                      *  ****** ******                                            

consensus_4005#0      AACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGA 413
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGA 473
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      AGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGG 533
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCG 593
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GACCGGGCGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACG 653
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGG 713
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GTCAACCGCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGG 773
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CGAAGGCGAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCA 833
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      ATGCACCGGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCG 893
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GGCCCCGAAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA 933
consensus_4005#1      ----------------------------------------