cluster # 4015

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4015 cluster # 4015 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4015#0 length = 619 sequences # 2

consensus_4015#1 length = 391 sequences # 1

consensusID : consensus_4015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCCCGACCAGCACACCGAGCACAATCCCCAGCGCGGTACACAACATCTTCGGTCCAGGAATCCCTTTCTTTTGCACTTCACTTGGCTCTGTTGTTACCAAGGCAGGCTCCTGCTACTGGCTGGTACGGATATGTGTGTGATTTCGGTGTTACGGTTTTGCTCACAGTTGCATCACATTATTGCACTGGCCGTGAAAACACCATGGAGACAAAACCACTTGGTACGACACAATTTTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGGACGAAACCTGGATGGAATTCGTTTCGACCGCAGTGAATCGAAGCTGGCCCCAGATGACAGCTACCGTGTGAGTGTGTTTGTGTGTTGCGTGTTTGTGTTTTTGTGTGTAGCTGAAGCGGATTGTGTAAGGACGAACAGGGTAGGCTAGTGCCATGGTGGTTTGTTTTGGTTCTGGGCGCGCATGCGCCTACTGCGTTCGATGTCCGAACGATTTTGGCGTGCAGCTTGTGGATGCACTTTTGAGCGAGCACACCAATACAGTGATGAGTGGAAGATGAGAGCAGCAGGTAAACATTTCCATANGAAAAG]

[+] EMBL BM636251             [CCGCCCACGCGTCCGCCCACGCGTCCGGCCCGACCAGCACACCGAGCACAATCCCCAGCGCGGTACACAACATCTTCGGTCCAGGAATCCCTTTCTTTTGCACTTCACTTGGCTCTGTTGTTACCAAGGCAGGCTCCTGCTACTGGCTGGTACGGATATGTGTGTGATTTCGGTGTTACGGTTTTGCTCACAGTTGCATCACATTATTGCACTGGCCGTGAAAACACCATGGAGACAAAACCACTTGGTACGACACAATTTTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGGACGAAACCTGGATGGAATTCGTTTCGACCGCAGTGAATCGAAGCTGGCCCCAGATGACAGCTACCGTGTGAGTGTGTTTGTGTGTTGCGTGTTTGTGTTTTTGTGTGTAGCTGAAGCGGATTGTGTAAGGACGAACAGGGTAGGCTAGTGCCATGGTGGTTTGTTTTGGTTCTGGGCGCGCATGCGCCTACTGCGTTCGATGTCCGAACGATTTTGGCGTGCAGCTTGTGGATGCACTTTTGAGCGAGCACACC                                                       ]
[+] EMBL BX620083             [                        acaGCCCGACCAGCACACCGAGCACAATCCCCAGCGCGGTACACAACATCTTCGGTCCAGGAATCCCTTTCTTTTGCACTTCACTTGGCTCTGTTGTTACCAAGGCAGGCTCCTGCTACTGGCTGGTACGGATATGTGTGTGATTTCGGTGTTACGGTTTTGCTCACAGTTGCATCACATTATTGCACTGGCCGTGAAAACACCATGGAGACAAAACCACTTGGTACGACACAATTTTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGGACGAAACCTGGATGGAATTCGTTTCGACCGCAGTGAATCGAAGCTGGCCCCAGATGACAGCTACCGTGTGAGTGTGTTTGTGTGTTGCGTGTTTGTGTTTTTGTGTGTAGCTGAAGCGGATTGTGTAAGGACGAACAGGGTAGGCTAGTGCCATGGTGGTTTGTTTTGGTTCTGGGCGCGCATGCGCCTACTGCGTTCGATGT CGAACGATTTTGGCGTGCAGTTTGTGGATGCACTTTTGAGCGAGCACACCAATACAGTGATGAGTGGAAGATGAGAGCAGCAGGTAAACATTTCCATANGAAAAG]




>consensus_4015#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCCCGACCAGCACACCGAGCACAATCCCCAGCG
CGGTACACAACATCTTCGGTCCAGGAATCCCTTTCTTTTGCACTTCACTTGGCTCTGTTG
TTACCAAGGCAGGCTCCTGCTACTGGCTGGTACGGATATGTGTGTGATTTCGGTGTTACG
GTTTTGCTCACAGTTGCATCACATTATTGCACTGGCCGTGAAAACACCATGGAGACAAAA
CCACTTGGTACGACACAATTTTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCA
CTTTGGGGGGACGAAACCTGGATGGAATTCGTTTCGACCGCAGTGAATCGAAGCTGGCCC
CAGATGACAGCTACCGTGTGAGTGTGTTTGTGTGTTGCGTGTTTGTGTTTTTGTGTGTAG
CTGAAGCGGATTGTGTAAGGACGAACAGGGTAGGCTAGTGCCATGGTGGTTTGTTTTGGT
TCTGGGCGCGCATGCGCCTACTGCGTTCGATGTCCGAACGATTTTGGCGTGCAGCTTGTG
GATGCACTTTTGAGCGAGCACACCAATACAGTGATGAGTGGAAGATGAGAGCAGCAGGTA
AACATTTCCATANGAAAAG

consensusID : consensus_4015#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [AGGCACATTCGCAGAAANTAGTGCAGCGTCGAACAAGGACCGTACAGCCCCGTACCAGCACACCCGAGCACAATCCCGTAGCGCGGTACACACATGCTTCGGTCCAGGAATCCCTTTGCATTATGGCACTGTCACTNGGCCCCTGCTGTTACCAAGGCAGCTGTCTGCTACTGGCTGGTACGGATATGTNTGTGATTTCGCTGTTACGGGGTACGTTTTTCGCTCACAGTTGCATCACATTTATTGCACTGCCCGTGAAAACACCACGGGGACATAAACGAACCACACGATACGACTACAATTTCTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGAACGAAACCTGGATGAATTAAACCTCGGGAATTCTGCC]

[-] EMBL AL929833             [AGGCACATTCGCAGAAANTAGTGCAGCGTCGAACAAGGACCGTACAGCCCCGTACCAGCACACCCGAGCACAATCCCGTAGCGCGGTACACACATGCTTCGGTCCAGGAATCCCTTTGCATTATGGCACTGTCACTNGGCCCCTGCTGTTACCAAGGCAGCTGTCTGCTACTGGCTGGTACGGATATGTNTGTGATTTCGCTGTTACGGGGTACGTTTTTCGCTCACAGTTGCATCACATTTATTGCACTGCCCGTGAAAACACCACGGGGACATAAACGAACCACACGATACGACTACAATTTCTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGAACGAAACCTGGATGAATTAAACCTCGGGAATTCTGCC]




>consensus_4015#1
AGGCACATTCGCAGAAANTAGTGCAGCGTCGAACAAGGACCGTACAGCCCCGTACCAGCA
CACCCGAGCACAATCCCGTAGCGCGGTACACACATGCTTCGGTCCAGGAATCCCTTTGCA
TTATGGCACTGTCACTNGGCCCCTGCTGTTACCAAGGCAGCTGTCTGCTACTGGCTGGTA
CGGATATGTNTGTGATTTCGCTGTTACGGGGTACGTTTTTCGCTCACAGTTGCATCACAT
TTATTGCACTGCCCGTGAAAACACCACGGGGACATAAACGAACCACACGATACGACTACA
ATTTCTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGAACGAAA
CCTGGATGAATTAAACCTCGGGAATTCTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4015#0      -----------------CCGCCCACGCGTCCGCCCACG--CGTCCGGCCCG--ACCAGCA 39
consensus_4015#1      AGGCACATTCGCAGAAANTAGTGCAGCGTCGAACAAGGACCGTACAGCCCCGTACCAGCA 60
                                               *****   * * *  *** * ****   *******

consensus_4015#0      CACC-GAGCACAATCCC-CAGCGCGGTACACAACATCTTCGGTCCAGGAATCCCTTTCTT 97
consensus_4015#1      CACCCGAGCACAATCCCGTAGCGCGGTACACACATGCTTCGGTCCAGGAATCCCTTTGCA 120
                      **** ************  *************    *********************   

consensus_4015#0      TT---GCACT-TCACTTGGCTC-TGTTGTTACCAAGGCAGGCTCCTGCTACTGGCTGGTA 152
consensus_4015#1      TTATGGCACTGTCACTNGGCCCCTGCTGTTACCAAGGCAGCTGTCTGCTACTGGCTGGTA 180
                      **   ***** ***** *** * ** **************    ****************

consensus_4015#0      CGGATATGTGTGTGATTTCGGTGTTACGG--------TTTTGCTCACAGTTGCATCACAT 204
consensus_4015#1      CGGATATGTNTGTGATTTCGCTGTTACGGGGTACGTTTTTCGCTCACAGTTGCATCACAT 240
                      ********* ********** ********        *** *******************

consensus_4015#0      T-ATTGCACTGGCCGTGAAAACACCATGGAGACA-----AAACCACTTGGTACGAC-ACA 257
consensus_4015#1      TTATTGCACTGCCCGTGAAAACACCACGGGGACATAAACGAACCACACGATACGACTACA 300
                      * ********* ************** ** ****      ******  * ****** ***

consensus_4015#0      ATTT-TTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGGACGAAA 316
consensus_4015#1      ATTTCTTCAAACCATTGCGCTTTCTTCTCTTCTGACGATGACCACTTTGGGGGAACGAAA 360
                      **** ************************************************ ******

consensus_4015#0      CCTGGATGGAATTCGTTTCGACCGCAGTGAATCGAAGCTGGCCCCAGATGACAGCTACCG 376
consensus_4015#1      CCTGGATGAATTAAACCTCGGGAATTCTGCC----------------------------- 391
                      ******** * *     ***       **                               

consensus_4015#0      TGTGAGTGTGTTTGTGTGTTGCGTGTTTGTGTTTTTGTGTGTAGCTGAAGCGGATTGTGT 436
consensus_4015#1      ------------------------------------------------------------
                                                                                  

consensus_4015#0      AAGGACGAACAGGGTAGGCTAGTGCCATGGTGGTTTGTTTTGGTTCTGGGCGCGCATGCG 496
consensus_4015#1      ------------------------------------------------------------
                                                                                  

consensus_4015#0      CCTACTGCGTTCGATGTCCGAACGATTTTGGCGTGCAGCTTGTGGATGCACTTTTGAGCG 556
consensus_4015#1      ------------------------------------------------------------
                                                                                  

consensus_4015#0      AGCACACCAATACAGTGATGAGTGGAAGATGAGAGCAGCAGGTAAACATTTCCATANGAA 616
consensus_4015#1      ------------------------------------------------------------
                                                                                  

consensus_4015#0      AAG 619
consensus_4015#1      ---