cluster # 4042

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Anopheles gambiae
cluster # 4042 cluster # 4042 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4042#0 length = 832 sequences # 2

consensus_4042#1 length = 682 sequences # 1

consensusID : consensus_4042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 832
fasta sequence

                              [CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATTCAACCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCGTCCGCCGGACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAATAACTTAAGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT]

[+] EMBL BM625755             [CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATTCAACCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGG                                                                                                                                                 ]
[+] EMBL BM655983             [                                                                                                                                                                                                                                                                                                       ccgCCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCGTCCGCCGGACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAATAACTTAAGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT]




>consensus_4042#0
CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGC
CGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTG
TGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGA
CAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCC
GGCCGTCAATCAAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATTCAACC
GCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCA
CCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCA
GCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAA
ATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCA
CAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAA
GGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCA
GCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCGTCCGCCG
GACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAATAACTTA
AGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT

consensusID : consensus_4042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence

                              [CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGACCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGGCCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGCACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGGTGAACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTTTCCAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCCCTCCCCAGCAGCACCAGCAACAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAGCAAAA]

[+] EMBL BM588200             [CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGACCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGGCCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGCACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGGTGAACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTTTCCAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCCCTCCCCAGCAGCACCAGCAACAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAGCAAAA]




>consensus_4042#1
CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGA
CCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGG
CCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGC
ACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCG
CCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGT
GTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCG
ACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTC
CGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGGTGA
ACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTTTC
CAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCCCTC
CCCAGCAGCACCAGCAACAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCG
TACAGCAGCAGCAGCAGCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4042#0      ------------------------------------------------------------
consensus_4042#1      CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGA 60
                                                                                  

consensus_4042#0      ------------------------------------------------------------
consensus_4042#1      CCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGG 120
                                                                                  

consensus_4042#0      ------------------------------------------------------------
consensus_4042#1      CCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGC 180
                                                                                  

consensus_4042#0      -CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCG 59
consensus_4042#1      ACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCG 240
                       *  ********************************************************

consensus_4042#0      CCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGT 119
consensus_4042#1      CCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGT 300
                      ************************************************************

consensus_4042#0      GTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCG 179
consensus_4042#1      GTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCG 360
                      ************************************************************

consensus_4042#0      ACAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTC 239
consensus_4042#1      ACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTC 420
                      **************** *******************************************

consensus_4042#0      CGGCCGTCAATCAAG---TACAAATA-ATTACCTCCTCGGGGCAGGTGGTGCAGCAGATT 295
consensus_4042#1      CGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGG--T 478
                      ***************   *  ** ** *  *   **    *   * **   * *  *  *

consensus_4042#0      CAACCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAG 355
consensus_4042#1      GAACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTT 538
                       *** *    * *  * * * **   * * ** ** *  **  *  *  *  *  * *  

consensus_4042#0      --CAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACC 413
consensus_4042#1      TCCAGTAC-AAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCC 597
                        *** ** ***   *         *  ****      ******  ***    **   **

consensus_4042#0      AGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGA 473
consensus_4042#1      CTCCCCAGCAGCACCAGCAACAGCTGCAACA--GGCGCAGGTTGT-GCAGCAGCA----- 649
                        *  ******** ** ** **** *** **   **    *  *  *********     

consensus_4042#0      AACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTAT 533
consensus_4042#1      ---CCAAACCGTCGTACAGCAGCAGCAGCAGCAAAA------------------------ 682
                         * *** *    *** *** *  * ** ****                          

consensus_4042#0      TGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGT 593
consensus_4042#1      ------------------------------------------------------------
                                                                                  

consensus_4042#0      GCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGC 653
consensus_4042#1      ------------------------------------------------------------
                                                                                  

consensus_4042#0      AGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCG 713
consensus_4042#1      ------------------------------------------------------------
                                                                                  

consensus_4042#0      TCCGCCGGACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAA 773
consensus_4042#1      ------------------------------------------------------------
                                                                                  

consensus_4042#0      TAACTTAAGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT 832
consensus_4042#1      -----------------------------------------------------------