cluster # 4047

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Anopheles gambiae
cluster # 4047 cluster # 4047 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4047#0 length = 928 sequences # 2

consensus_4047#1 length = 518 sequences # 1

consensusID : consensus_4047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 928
fasta sequence

                              [CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGTGGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCCAAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGCGGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACGTTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACG-GTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTCGGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCGTTTATTGTTGCGTTGCTTTTTTTAAGGC]

[+] EMBL BM581965             [CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGTGGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCCAAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGCGGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACGTTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACG GTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTG                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM580082             [                                                                                                                                                                                                                                                                                                                                                                      ccgccCACGCGT CCGGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGAATGCTCGGTAAGCTACCGGGGCAACCAGGCGGC GGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTCGGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCGTTTATTGTTGCGTTGCTTTTTTTAAGGC]




>consensus_4047#0
CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGT
GGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCC
AAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGC
GGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACG
TTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAA
TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT
ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG
GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT
CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT
GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG
CAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC
GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA
ATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTA
TGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTC
GGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCG
TTTATTGTTGCGTTGCTTTTTTTAAGGC

consensusID : consensus_4047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC]

[+] EMBL BM593257             [CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC]




>consensus_4047#1
CCGCCCACGCGTCCGATCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGAT
GGTGCCAGGCGGCGGTATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCT
ACAGCAGCAACAATCGGTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTA
CTATTCCCAATACGGTCAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAAT
GGCCGCATCCGGTCCTGGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCT
CGGTAAGCTACCGGGGCAACCAGGCGGCGGCGGCGGTGGTTCTACGGGCGGTCTGCAACC
GTCCGCACTGCCACCGTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCA
GGGTGCTGGTAAAAAATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAA
TGATGCATTTGTGTATGCCACCGTGGCACACTGGACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4047#0      CCGGCGGTGGGCGCTGCCGGGCTACCGATTGGCGGTCCGAGTGCAATGGGCGGCCCCGGT 60
consensus_4047#1      ------------------------------------------------------------
                                                                                  

consensus_4047#0      GGCAGTGGTAGCAAAAAGAAGGACAAGGATCGCGATAAGGATCGCGAGAAGAGTAAATCC 120
consensus_4047#1      ------------------------------------------------------------
                                                                                  

consensus_4047#0      AAGTCCTCCAGCTCGTCGTCGTCGGCGGAGCATGGCAGCCGGCAGAATGGGGGAAGCGGC 180
consensus_4047#1      ------------------------------------------------------------
                                                                                  

consensus_4047#0      GGCGGCTCGGCGGCTTCCGGCAACAGCAGTAGCAAATCTTCCAGCAAGAATCTTTCAACG 240
consensus_4047#1      ------------------------------------------------------------
                                                                                  

consensus_4047#0      TTACAGCAAACCCAACAGCAGCAGCAGCAGCAGCAGTACGGTATGTACAATGCGAACCAA 300
consensus_4047#1      -------------------------------------------CCGCCCACGCGT-CCGA 16
                                                                     * * ***  ** *

consensus_4047#0      TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT 360
consensus_4047#1      TCGATGCAGGCGACCAACGCAGCAATGACATCGATGGCTGGGATGGTGCCAGGCGGCGGT 76
                      ************************************************************

consensus_4047#0      ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG 420
consensus_4047#1      ATGCACGGTGGCAGTTACCATCAACAGCCCGGTTTCGACTATCTACAGCAGCAACAATCG 136
                      ************************************************************

consensus_4047#0      GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT 480
consensus_4047#1      GTCGCAGCACTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGTACTATTCCCAATACGGT 196
                      ************************************************************

consensus_4047#0      CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT 540
consensus_4047#1      CAGTTCGGCCAACAGCAGCAGCAGCAACAGTTTCAGCAACAAATGGCCGCATCCGGTCCT 256
                      ************************************************************

consensus_4047#0      GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG 600
consensus_4047#1      GGTTCGATGCTGCTGAACGCATCGTCCGGGCCGGCAGGGATGCTCGGTAAGCTACCGGGG 316
                      ************************************************************

consensus_4047#0      CAACCAGGCGGCGGGCGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC 660
consensus_4047#1      CAACCAGGCGGCGG-CGGCGGTGGTTCTACGGGCGGTCTGCAACCGTCCGCACTGCCACC 375
                      ************** *********************************************

consensus_4047#0      GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA 720
consensus_4047#1      GTACTACTACGGTGGAGGTTCCGGTACGGGTACGGCCACCAACCAGGGTGCTGGTAAAAA 435
                      ************************************************************

consensus_4047#0      ATAAGACTCTACAATGCTTCGTCACTCGACGGCAGGAGCAGGCAATGATGCATTTGTGTA 780
consensus_4047#1      ATAAGACTCTACAATGCTTCGTTACTCGACGGTAGGAGCATGCAATGATGCATTTGTGTA 495
                      ********************** ********* ******* *******************

consensus_4047#0      TGCCACCGTGGCACACTGGACTCAGTCAACTCCCGCCTTCCACTGGGTCACCTCGGGGTC 840
consensus_4047#1      TGCCACCGTGGCACACTGGACTC------------------------------------- 518
                      ***********************                                     

consensus_4047#0      GGGAGGGAGGAACGCTTGTCAGTGGGGGAGAAGCCTTTGTTCGCTCGATGGTGGAGAGCG 900
consensus_4047#1      ------------------------------------------------------------
                                                                                  

consensus_4047#0      TTTATTGTTGCGTTGCTTTTTTTAAGGC 928
consensus_4047#1      ----------------------------