cluster # 4050

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Anopheles gambiae
cluster # 4050 cluster # 4050 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4050#0 length = 693 sequences # 1

consensus_4050#1 length = 610 sequences # 1
consensus_4050#2 length = 608 sequences # 1

consensusID : consensus_4050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTACCGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTGCGAGTCTGCCAGATCGACGTGCTCTACCAAGTGGACCGCGCGTTTGGGCACACAACAGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAACCCCG]

[+] EMBL BM655840             [CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTACCGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTGCGAGTCTGCCAGATCGACGTGCTCTACCAAGTGGACCGCGCGTTTGGGCACACAACAGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAACCCCG]




>consensus_4050#0
CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTAC
CGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCG
TGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTG
CGAGTCTGCCAGATCGACGTGCTCTACCAAGTGGACCGCGCGTTTGGGCACACAACAGGC
CCCAAGTGGACAGGTTTCTTCCTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGT
GTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTA
GCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCGGGAG
CACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAAC
ATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGC
GTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATC
ATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTG
GACTGCACGGAGAGTGGCAACGCGAAAACCCCG

consensusID : consensus_4050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTGCACGGCGTGCGACGA]

[+] EMBL BM577806             [CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTGCACGGCGTGCGACGA]




>consensus_4050#1
CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAG
CCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTT
CCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCG
CAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCC
TGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTG
TGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCG
AGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCT
ACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACT
CCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCA
ACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTGCACGG
CGTGCGACGA

consensusID : consensus_4050#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CCGCCGGACGGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTAGCACGGCGTGCGACGAG]

[+] EMBL BM600285             [CCGCCGGACGGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTAGCACGGCGTGCGACGAG]




>consensus_4050#2
CCGCCGGACGGTACGGAGCGGGCTTTTGCAAATCAGACCCGCAACACCGTAAGCAGCCTA
GACGACATAAGCGCGCTCCGGTGGTTGTGATAGGGCCCCAAGTGGACAGGTTTCTTCCTT
TTTTTTAGGACGGAAAATAGACACCGTTTGTGTGTGTGTGTGTGTGTGTGCAGTCGCAAG
GCAGGCAGAGATGGCAACCGTGCCGCACGTTTGGCTAGCGCTGGCCACGGTGATCCTGGC
CACGATGCACGGCATACCGGCAACGGCCAACCGGGAGCACAAGGTGCACAACATTGTGCT
GTACCCGAACAAGCAGTCCTGGTGTACGACGCGCAACATCAGCCAGGTGATAACCGAGCC
GGGCTGCAAGCAGGTGACGATCGACAACAACGTGTGCGTCGGCGCGTGCTTCAGCTACTC
GATACCGCACACGGAACCGTCCGATCCGGGCGAAATCATCGGCCCGTACTGCGACTCCTG
CCAGCCGTCCGACGTGTCGTACGTGTTTGTGAAGGTGGACTGCACGGAGAGTGGCAACGC
GAAAAGCCCGTACCTGTACAAACAGGTGCAGCTCATACACAACTGCACCTAGCACGGCGT
GCGACGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4050#1      ------------------------------------------------------------
consensus_4050#2      ------------------------------------------------------------
consensus_4050#0      CCGACGAGGGTGACCAGCCGCAAATACTAAGTGCTGCGCTGCGGTCGAGCGTCCTAGTAC 60
                                                                                  

consensus_4050#1      ------------------------------------------------------------
consensus_4050#2      ------------------------------------------------------------
consensus_4050#0      CGAGACCGGGAGAGACAGACAGCGAGAGAGAGAGAGAGCGAGCGAGCGAGCGAGCGAGCG 120
                                                                                  

consensus_4050#1      --------------------CCGCCCACGCGTCCGTACGGAGCGGGCTTTTGCAAAT--- 37
consensus_4050#2      ------------------------CCGCCGGACGGTACGGAGCGGGCTTTTGCAAAT--- 33
consensus_4050#0      TGTGTGCGCTTAGTAGCAGCCCGATAGTGTCTGAGTGTGATCCTGCCTTCTGCTAACGTG 180
                                                        **  *   * * *** *** **    

consensus_4050#1      CAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAG 97
consensus_4050#2      CAGACCCGCAACACCGTAAGCAGCCTAGACGACATAAGCGCGCTCCGGTGGTTGTGATAG 93
consensus_4050#0      CGAGTCTGCCAGATCG-ACGTGCTCTAC-CAAGTGGACCGCGCGTTTGGGCACACAACAG 238
                      *    * ** * * ** * *    ***  * *    * *****    * *      * **

consensus_4050#1      GGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGT 157
consensus_4050#2      GGCCCCAAGTGGACAGGTTTCTTCCTTTTTTTTAGGACGGAAAATAGACACCGTTTGTGT 153
consensus_4050#0      G-CCCCAAGTGGACAGGTTTCTTCCTTTTTTT-AGGACGGAAAATAGACACCGTTTGTGT 296
                      * ****************************** ***************************

consensus_4050#1      GTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTG 217
consensus_4050#2      GTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTG 213
consensus_4050#0      GTGTGTGTGTGTGTGTGCAGTCGCAAGGCAGGCAGAGATGGCAACCGTGCCGCACGTTTG 356
                      ************************************************************

consensus_4050#1      GCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCG 277
consensus_4050#2      GCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCAACGGCCAACCG 273
consensus_4050#0      GCTAGCGCTGGCCACGGTGATCCTGGCCACGATGCACGGCATACCGGCCACGGCCAACCG 416
                      ************************************************ ***********

consensus_4050#1      GGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCG 337
consensus_4050#2      GGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCG 333
consensus_4050#0      GGAGCACAAGGTGCACAACATTGTGCTGTACCCGAACAAGCAGTCCTGGTGTACGACGCG 476
                      ************************************************************

consensus_4050#1      CAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGT 397
consensus_4050#2      CAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGT 393
consensus_4050#0      CAACATCAGCCAGGTGATAACCGAGCCGGGCTGCAAGCAGGTGACGATCGACAACAACGT 536
                      ************************************************************

consensus_4050#1      GTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGA 457
consensus_4050#2      GTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGA 453
consensus_4050#0      GTGCGTCGGCGCGTGCTTCAGCTACTCGATACCGCACACGGAACCGTCCGATCCGGGCGA 596
                      ************************************************************

consensus_4050#1      AATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAA 517
consensus_4050#2      AATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAA 513
consensus_4050#0      AATCATCGGCCCGTACTGCGACTCCTGCCAGCCGTCCGACGTGTCGTACGTGTTTGTGAA 656
                      ************************************************************

consensus_4050#1      GGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCT 577
consensus_4050#2      GGTGGACTGCACGGAGAGTGGCAACGCGAAAAGCCCGTACCTGTACAAACAGGTGCAGCT 573
consensus_4050#0      GGTGGACTGCACGGAGAGTGGCAACGCGAAAACCCCG----------------------- 693
                      ******************************** ****                       

consensus_4050#1      CATACACAACTGCACCT-GCACGGCGTGCGACGA- 610
consensus_4050#2      CATACACAACTGCACCTAGCACGGCGTGCGACGAG 608
consensus_4050#0      -----------------------------------