cluster # 4053

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Anopheles gambiae
cluster # 4053 cluster # 4053 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4053#0 length = 855 sequences # 2

consensus_4053#1 length = 130 sequences # 1

consensusID : consensus_4053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 855
fasta sequence

                              [TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGATGAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATATGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCATTCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAGCAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTTCGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAAATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCATGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAAGCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCAAAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAACTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTCCGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGGTTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTGATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCACGATCTAACGTACTGT]

[+] EMBL BX614655             [TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGATGAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATATGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCATTCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAGCAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTTCGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAAATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCATGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAAGCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCAAAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAACTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTCCGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGGTTC                                                                                                                                    ]
[+] EMBL BX611670             [                                                                                                                                                                                                                                                                                                                     AAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAAATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCATGCGCTTTCGACACGCAGTGTACGCAAAAGCATCGCGTATAGTTTGAAGGCATCAGCAAAGCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCAAAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAACTGAACTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTCCGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGGTTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTGATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCACGATCTAACGTACTGT]




>consensus_4053#0
TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGAT
GAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATA
TGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCAT
TCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAG
CAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTT
CGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAA
ATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCA
TGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAA
GCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCA
AAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAA
CTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTC
CGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGG
TTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTG
ATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCAC
GATCTAACGTACTGT

consensusID : consensus_4053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 130
fasta sequence

                              [ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCATCCCGACCAGGGGACCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAGCAAAACTAGAAAGGCAAACCCAC]

[+] EMBL BX613704             [ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCATCCCGACCAGGGGACCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAGCAAAACTAGAAAGGCAAACCCAC]




>consensus_4053#1
ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCATCCCGACCAGGGGA
CCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAGCAAAACTAGAAAG
GCAAACCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4053#0      TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGAT 60
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      GAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATA 120
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      TGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCAT 180
consensus_4053#1      -------------ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCAT 47
                                   *** *************  *******  *******************

consensus_4053#0      TCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAG 240
consensus_4053#1      CCCGACCAGGGGACCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAG 107
                       ********* ************************ *** **  ****************

consensus_4053#0      CAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTT 300
consensus_4053#1      CAAAACTAGAAAGGCAAACCCAC------------------------------------- 130
                      ****************** ****                                     

consensus_4053#0      CGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAA 360
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      ATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCA 420
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      TGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAA 480
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      GCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCA 540
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      AAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAA 600
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      CTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTC 660
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      CGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGG 720
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      TTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTG 780
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      ATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCAC 840
consensus_4053#1      ------------------------------------------------------------
                                                                                  

consensus_4053#0      GATCTAACGTACTGT 855
consensus_4053#1      ---------------