cluster # 4064

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Anopheles gambiae
cluster # 4064 cluster # 4064 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4064#0 length = 674 sequences # 2

consensus_4064#1 length = 619 sequences # 1

consensusID : consensus_4064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCGCGGACGCGTGGGGAAAGGCGTGCACAGGCTAGGACACGAACCGTAGCTGAGCGTTCACGCTCGCTGCTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTTTCGAGCTAAACATGCGCGACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGGGCGGCGTGCACGAC]

[+] EMBL BM585864             [CCGCGGACGCGTGGGGAAAGGCGTGCACAGGCTAGGACACGAACCGTAGCTGAGCGTTCACGCTCGCTGCTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCAC                                                                                             ]
[+] EMBL BM592629             [                                                ccgGAGCGTACACGCTCGCTGGTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTTTCGAGCTAAACATGCGCGACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGGGCGGCGTGCACGAC]




>consensus_4064#0
CCGCGGACGCGTGGGGAAAGGCGTGCACAGGCTAGGACACGAACCGTAGCTGAGCGTTCA
CGCTCGCTGCTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCT
ATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGC
CGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACG
GCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGT
CGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACG
AGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAA
CGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCT
GTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCC
CCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTT
TCGAGCTAAACATGCGCGACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGG
GCGGCGTGCACGAC

consensusID : consensus_4064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTGGCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGTCGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACTACCGCCAGCCAGTGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTAC]

[+] EMBL BM578704             [CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTGGCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGTCGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACTACCGCCAGCCAGTGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTAC]




>consensus_4064#1
CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTG
GCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGT
CGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACTACCGCCAGCCAG
TGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCTG
AAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCA
GTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTC
GATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTA
CCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGG
GCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTT
CGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGAT
CCGCCGCATCAGCTGCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4064#0      ------------------------------------------------------------
consensus_4064#1      CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTG 60
                                                                                  

consensus_4064#0      ------------------------------------------------------------
consensus_4064#1      GCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGT 120
                                                                                  

consensus_4064#0      ---------------------------------CCGCGGACGCGTGGGGAAAGGCGTGCA 27
consensus_4064#1      CGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACT-ACCGCCAGCCA 179
                                                       *    ** ** *    *  * *   **

consensus_4064#0      CAGGCTAGGACACGA--ACCGTAGCTGAGCGTTCACG-------CTCGCTGCTAGCTGCT 78
consensus_4064#1      GTGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCT 239
                        ***  *     **  ** ** **  ** ** * **       ******* ********

consensus_4064#0      GAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGC 138
consensus_4064#1      GAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGC 299
                      ************************************************************

consensus_4064#0      AGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCT 198
consensus_4064#1      AGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCT 359
                      ************************************************************

consensus_4064#0      CGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGT 258
consensus_4064#1      CGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGT 419
                      ************************************************************

consensus_4064#0      ACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCG 318
consensus_4064#1      ACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCG 479
                      ************************************************************

consensus_4064#0      GGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCT 378
consensus_4064#1      GGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCT 539
                      ************************************************************

consensus_4064#0      TCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGA 438
consensus_4064#1      TCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGA 599
                      ************************************************************

consensus_4064#0      TCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCT 498
consensus_4064#1      TCCGCCGCATCAGCTGCTAC---------------------------------------- 619
                      ********************                                        

consensus_4064#0      CCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGC 558
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      CGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTTTCGAGCTAAACATGCGCG 618
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      ACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGGGCGGCGTGCACGAC 674
consensus_4064#1      --------------------------------------------------------