cluster # 4072

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Anopheles gambiae
cluster # 4072 cluster # 4072 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4072#0 length = 892 sequences # 2

consensus_4072#1 length = 299 sequences # 1

consensusID : consensus_4072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 892
fasta sequence

                              [GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTACAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGATTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAATAAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAACTAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAACATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAAAAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGCGTGCGATCGATCGCTTGCGCA-CAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTGCGCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAACCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGCAGATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGGAACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATTTTTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGGATGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTGTACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG]

[+] EMBL CNS09FC0             [GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTACAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGATTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAATAAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAACTAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAACATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAAAAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGCGTGCGATCGATCGCTTGCGCA CAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTGCGCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAACCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGCA                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BM610973             [                                                                                                                                                                                                                                                                                                                                                        TGGCAATTAGCAGCAAAAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGAGCCACATCGTACGCTTTGCGTGCGATCGATCGCTTGCGCAGCAGCA GGTCAGCAACCTGCTCGAACTTGTCCTCATTGCGCGCATAGTACATTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAGTGACCGGCCGGTAGCAGATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGGAACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATTTTTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGGATGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTGTACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG]




>consensus_4072#0
GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTA
CAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGA
TTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAAT
AAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAAC
TAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAAC
ATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAA
AAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGC
GTGCGATCGATCGCTTGCGCACAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTGC
GCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAA
CCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGCA
GATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGGA
ACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATTT
TTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGGA
TGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTGT
ACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG

consensusID : consensus_4072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [TAGTGCGCTTTGTGTGCGATTGATCGCTTGCGCAGCAGCAGGTCAGCAACCTGCTCGACCTTGTCCTCATTGCGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGCGGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGACCGGCCGGTAGCAGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCGAGAATAGGCAGGAGCTTTGTCTTGCACGAGCTGGACAACGAAGCCGGACGCGTGGGCGG]

[-] EMBL BM587198             [TAGTGCGCTTTGTGTGCGATTGATCGCTTGCGCAGCAGCAGGTCAGCAACCTGCTCGACCTTGTCCTCATTGCGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGCGGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGACCGGCCGGTAGCAGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCGAGAATAGGCAGGAGCTTTGTCTTGCACGAGCTGGACAACGAAGCCGGACGCGTGGGCGG]




>consensus_4072#1
TAGTGCGCTTTGTGTGCGATTGATCGCTTGCGCAGCAGCAGGTCAGCAACCTGCTCGACC
TTGTCCTCATTGCGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGC
GGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGA
CCGGCCGGTAGCAGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCG
AGAATAGGCAGGAGCTTTGTCTTGCACGAGCTGGACAACGAAGCCGGACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4072#0      GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTA 60
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      CAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGA 120
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      TTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAAT 180
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      AAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAAC 240
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      TAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAAC 300
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      ATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAA 360
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      AAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGC 420
consensus_4072#1      -----------------------------------------------TAGTGCGCTTTGT 13
                                                                     * ** ******* 

consensus_4072#0      GTGCGATCGATCGCTTGCGCA-CAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTG 479
consensus_4072#1      GTGCGATTGATCGCTTGCGCAGCAGCAGG-TCAGCAACCTGCTCGACCTTGTCCTCATTG 72
                      ******* ************* ******* **************** *************

consensus_4072#0      CGCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCA 539
consensus_4072#1      CGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGCGGCCGCACCTCA 132
                      ************ **** ************* *********** ** *************

consensus_4072#0      ACCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGC 599
consensus_4072#1      ACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGACCGGCCGGTAGC 192
                      ******* ********************** **** ******** ***************

consensus_4072#0      AGATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGG 659
consensus_4072#1      AGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCGAGAATAGGCAGG 252
                      ****** ************** ******* ************************ *****

consensus_4072#0      AACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATT 719
consensus_4072#1      AGCTTTGTCTTGCACGAGCTGGACAACGAAGCC-GGACGCGTGGGCGG------------ 299
                      * ********* ********************  ** ** **                  

consensus_4072#0      TTTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGG 779
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      ATGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTG 839
consensus_4072#1      ------------------------------------------------------------
                                                                                  

consensus_4072#0      TACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG 892
consensus_4072#1      -----------------------------------------------------