cluster # 4073

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Anopheles gambiae
cluster # 4073 cluster # 4073 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4073#0 length = 765 sequences # 2

consensus_4073#1 length = 671 sequences # 1

consensusID : consensus_4073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 765
fasta sequence

                              [TCGCCCGAGGTTAAAGGTGTCCGGTTCGAGAGCGCGAGCGCTTTTCGTTTGGTTGTAGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCC----GTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTACATGATCTTCTGCACCTGCTTCACGAGCGATGGCGGCGCGAGCCAGCGACCGAAGCTAGCGGCGGCCAGTGTGGCAGC-GGCGCACCGGAAACCAGCAATACACAGCGACCCCTAACCTACCAAACGATCTGAGCGTGGGACGGGCGAGAGTGTTCGTTCGGGGAGTGTGTAAGTGTGAGCCAAAAACGAAACGTAAAACAAANATCATTATTTTAACGGTAAATTTTTGGAGATACAGAATCCAAGCCG-CTCGCCCAAGCTCCC-AAAAAGGCATTGGAGAGA-CCTCATTGCGGGCTNGCGTGCGTGTGCGTAAGTGCGTAAGTGTGTGTAAGATTGAGTTTTTCCGAGTGAATTACGTGATGTGTATGTGAGAGAAGATTCNACTTCAAACGTCTGGAATCCGCTCCTGAAGATCGGTTTCAGTGCAACAAAAAGCATACCTTTTCGCCCGATAAGTCAGTGTCT]

[+] EMBL AL934541             [TCGCCCGAGGTTAAAGGTGTCCGGTTCGAGAGCGCGAGCGCTTTTCGTTTGGTTGTAGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCC    GTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTACATGATCTTCTGCACCTGCTTCACGAGCGATGGCGGCGCGAGCCAGCGACCGAAGCTAGCGGCGGCCAGTGTGGCAGC GGCGCACCGGAAACCAGCAATACACAGCGACCCCTAACCTACCAAACGATCTGAGCGTGGGACGGGCGAGAGTGTTCGTTCGGGGAGTGTGTAAGTGTGAGCCAAAAACGAAACGTAAAACAAANATCATTATTTTAACGGTAAATTTTTGGAGATACAGAATCCAAGCCG CTCGCCCAAGCTCCC AAAAAGGCATTGGAGAGA CCTCATTGCGGGCTN                                                                                                                                                                        ]
[+] EMBL BX627926             [                                                    TTGTCGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCCGTCTGTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTACATGATCTTCTGCACCTGCTTCACGAGCGATGGCGGCGCGAGCCAGCGACCGAAGCTAGCGGCGGCCAGTGTGGCAGCAGCCGCACCGCACACCAGCAATACACAGCGACCCCTAACCTACCAAACGATCTGAGCGTGGGACGGGCGAGAGTGTTCGTTCGGGGAGTGTGTTTGTGTGAACCAAAAACGAAACGTAAAA AAA ATCATTATTTTTAAGG CAATTTTT GAGATACAG AT CAAGCCGCCTCG CCAAGCTCCCAAAAAAGGCATTGGAGAGACCCTCATTGCGGCTTGGCGTGCGTGTGCGTAAGTGCGTAAGTGTGTGTAAGATTGAGTTTTTCCGAGTGAATTACGTGATGTGTATGTGAGAGAAGATTCNACTTCAAACGTCTGGAATCCGCTCCTGAAGATCGGTTTCAGTGCAACAAAAAGCATACCTTTTCGCCCGATAAGTCAGTGTCT]




>consensus_4073#0
TCGCCCGAGGTTAAAGGTGTCCGGTTCGAGAGCGCGAGCGCTTTTCGTTTGGTTGTAGCA
AGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCCG
TCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAG
CATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCT
GGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTA
CATGATCTTCTGCACCTGCTTCACGAGCGATGGCGGCGCGAGCCAGCGACCGAAGCTAGC
GGCGGCCAGTGTGGCAGCGGCGCACCGGAAACCAGCAATACACAGCGACCCCTAACCTAC
CAAACGATCTGAGCGTGGGACGGGCGAGAGTGTTCGTTCGGGGAGTGTGTAAGTGTGAGC
CAAAAACGAAACGTAAAACAAANATCATTATTTTAACGGTAAATTTTTGGAGATACAGAA
TCCAAGCCGCTCGCCCAAGCTCCCAAAAAGGCATTGGAGAGACCTCATTGCGGGCTNGCG
TGCGTGTGCGTAAGTGCGTAAGTGTGTGTAAGATTGAGTTTTTCCGAGTGAATTACGTGA
TGTGTATGTGAGAGAAGATTCNACTTCAAACGTCTGGAATCCGCTCCTGAAGATCGGTTT
CAGTGCAACAAAAAGCATACCTTTTCGCCCGATAAGTCAGTGTCT

consensusID : consensus_4073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [AGAATCGCCCCGAGGTTTGTCGGTTCGAGAGCGCGAGCGCTTTTCGTTGGTTGTAGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCCGTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTACATGATCTTCTGCACCTGCTTCACAGAGCGGAATGGCTGGCGCGAGCCAGCGACNCCGAAGCTAGCGGCGGCCAGTGTGGCAGCTGGCCNGCAACCGCCAAACCAGCAACTACACAGCGGGAAGCCCCCCGCCATTAACAACCCGTTAACCGAAGAACTGATNCGTTGGGGAAGGAGCCGGATTGGCGAGCAGNGATCAAACCATNGGCNGGCNGACCCNGCAAGCGGACGATGTTATCCCGGGTTTCAGNGGAGGAAGCTATGTTGNTTACTCGGTTGTTTGGACTGNGNGCCGNCCCAACAACCAACGAAACCAACCGGGAACNACAACCCGGTACANACTGANGACACACACACTTCCAAATACTCAAAC]

[+] EMBL AL930264             [AGAATCGCCCCGAGGTTTGTCGGTTCGAGAGCGCGAGCGCTTTTCGTTGGTTGTAGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCCGTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTACATGATCTTCTGCACCTGCTTCACAGAGCGGAATGGCTGGCGCGAGCCAGCGACNCCGAAGCTAGCGGCGGCCAGTGTGGCAGCTGGCCNGCAACCGCCAAACCAGCAACTACACAGCGGGAAGCCCCCCGCCATTAACAACCCGTTAACCGAAGAACTGATNCGTTGGGGAAGGAGCCGGATTGGCGAGCAGNGATCAAACCATNGGCNGGCNGACCCNGCAAGCGGACGATGTTATCCCGGGTTTCAGNGGAGGAAGCTATGTTGNTTACTCGGTTGTTTGGACTGNGNGCCGNCCCAACAACCAACGAAACCAACCGGGAACNACAACCCGGTACANACTGANGACACACACACTTCCAAATACTCAAAC]




>consensus_4073#1
AGAATCGCCCCGAGGTTTGTCGGTTCGAGAGCGCGAGCGCTTTTCGTTGGTTGTAGCAAG
CTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCTGTCCGTC
TGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTGATCAGCA
TCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGACTTTCTGG
TGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATGCTGTACA
TGATCTTCTGCACCTGCTTCACAGAGCGGAATGGCTGGCGCGAGCCAGCGACNCCGAAGC
TAGCGGCGGCCAGTGTGGCAGCTGGCCNGCAACCGCCAAACCAGCAACTACACAGCGGGA
AGCCCCCCGCCATTAACAACCCGTTAACCGAAGAACTGATNCGTTGGGGAAGGAGCCGGA
TTGGCGAGCAGNGATCAAACCATNGGCNGGCNGACCCNGCAAGCGGACGATGTTATCCCG
GGTTTCAGNGGAGGAAGCTATGTTGNTTACTCGGTTGTTTGGACTGNGNGCCGNCCCAAC
AACCAACGAAACCAACCGGGAACNACAACCCGGTACANACTGANGACACACACACTTCCA
AATACTCAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4073#0      ----TCGCCC-GAGGTTAAAGGTGTCCGGTTCGAGAGCGCGAGCGCTTTTCGTTTGGTTG 55
consensus_4073#1      AGAATCGCCCCGAGGTT-----TGTC-GGTTCGAGAGCGCGAGCGCTTTTCGTT-GGTTG 53
                          ****** ******     **** *************************** *****

consensus_4073#0      TAGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCT 115
consensus_4073#1      TAGCAAGCTTTGCTTCGGCTATTTCTGCAAATATCGAGCCTATTTTGCCTCCGTCCATCT 113
                      ************************************************************

consensus_4073#0      GTCCGTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTG 175
consensus_4073#1      GTCCGTCTGTCTGTCAAGATGCAGCTGCTGCAACGGAAAAAGACTGACCCGAGCTTCGTG 173
                      ************************************************************

consensus_4073#0      ATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGAC 235
consensus_4073#1      ATCAGCATCGAGAGCGGTGTCGAGGAGGTGCGGGAACCTAAGGTACACGAGGAATGTGAC 233
                      ************************************************************

consensus_4073#0      TTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATG 295
consensus_4073#1      TTTCTGGTGGATGTGCTCACCGGCAAGCGGTCGGTGTCGCCCGATTTCTGCTGCAAGATG 293
                      ************************************************************

consensus_4073#0      CTGTACATGATCTTCTGCACCTGCTTCAC-GAGCG--ATGGC-GGCGCGAGCCAGCGACC 351
consensus_4073#1      CTGTACATGATCTTCTGCACCTGCTTCACAGAGCGGAATGGCTGGCGCGAGCCAGCGACN 353
                      ***************************** *****  ***** **************** 

consensus_4073#0      --GAAGCTAGCGGCGGCCAGTGTGGCAGCGGCGCACCGGAAACCAGCAATACACAGCGAC 409
consensus_4073#1      CCGAAGCTAGCGGCGGCCAGTGTGGCAGCTG---GCCNGCAACCGCCAA-AC-CAGCAAC 408
                        *************************** *    ** * ****  *** ** **** **

consensus_4073#0      CCCTAACCTACCAAACGATCTGAGCGTGGGACGGGCGAGAGTGTTCGTTCGGGGAGTGTG 469
consensus_4073#1      ---TACACAGCGGGAAGCCCCCCGCCATTAACAACCCG------TTAACCGAAGAACTGA 459
                         **  *  *   * *  *   **     **   *        *    **  **     

consensus_4073#0      TAAGTGTGAGCCAAAAACGAAACGTAAAACAAANATCATTATTTTAACGGTAAATTTTTG 529
consensus_4073#1      TNCGTTGGGGAAGGAGCCGGATTGGCGAGCAGNGATCA-------AACCATNGGCNGGCN 512
                      *  **  * *    *  ** *  *   * **   ****       ***  *         

consensus_4073#0      GAGATACAGAATCCAAGCCGCTCGCCCAAGCTCCCAAAAAGGCATTGGAGAGACCTCATT 589
consensus_4073#1      GACCCNGCAAGCGGACGATGTTATCCCGGGTTTCAGNGGAGG--------AAGCTATGTT 564
                      **       *    * *  * *  ***  * * *     ***        *  *    **

consensus_4073#0      GCGGGCTNGCGTGCGTGTGCGTAAGTGCGTAAGTGTGTGTAAGATTGAGTTTTTCCGAGT 649
consensus_4073#1      GNTTACTCGGTTGTTTGGAC-TGNGNGC-CGNCCCAACAACCAACGAAACCAACCGGGAA 622
                      *    ** *  **  **  * *  * **               *   *      * *   

consensus_4073#0      GAATTACGTGATGTGTATGTGAGAGAAGATTCNACTTCAAACGTCTGGAATCCGCTCCTG 709
consensus_4073#1      CNACAACCCGGTACANAC-TGANGACACACACACTTCCAAATACTCAAAC---------- 671
                        *  **  * *    *  ***    * *  *   * ****       *           

consensus_4073#0      AAGATCGGTTTCAGTGCAACAAAAAGCATACCTTTTCGCCCGATAAGTCAGTGTCT 765
consensus_4073#1      --------------------------------------------------------