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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1015 fasta sequence
[CCGAAGCGCCAGTCCGATAGAGAGTGTTGCTCTTAATTGGAAGCAATTGGTGCTGATTGAGTTCCGGGGCGCGCGCTCGCAGTACCACAAAGAGTGAAATTCACCTCCAAAGGTGTATTTGTGTCTGTTTGTGGCCGTGTGTGTGTGTGCGTGTGTGTGTGAGCCAACTTGGCGTCAGTTTGTCCTTTCCGCCGAAGAGCAGCTGTTGAATTCAACGGTGGGAAGCTGCCGAGAAACAGTGGGTGTGTTGTGGGAAAGCAGAACCGCTACACCATGTTTACCCTTCCACTGTACAAGGACAACGTCATGGTCACCTCCTGGAGTGACGCTTCGTCCTACCGGATGAAGAAGAATATGGCCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGCATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGCAACCAGGGTATCCATTCGACGCCCGCCTCGAACCTGAAGCTGTCGGAACAGATGCGCTACGCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAGCACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACCGGCTGGCCACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGACCGACCGGCAGCGGCGGCATCTCGTGCAGCCTCGCCTCCCTGCCGGACATATCCGCCAACAACTCGCAGTTCTTTGAGGTGCTGTACGTCGGCAAGATCAAGGTGTCGCACAAGCGCGTCCCGTACACGTTCATCGACGAGGCGCTGCCAAAGTTCAAGGCGTACGATGCGGAAAAGCTGCGCCAGCAGCAGGAAGCATCGCGAAAGCAAAATGTACCGATTAATGCAGAATCGGTAAGCAGCAGTACGGCGGAAGCCGCAACGACGCAGCGCAGCAATGAGGCCGAGAATAAGGGCACAGAGT]
[+] EMBL BM626757 [CCGAAGCGCCAGTCCGATAGAGAGTGTTGCTCTTAATTGGAAGCAATTGGTGCTGATTGAGTTCCGGGGCGCGCGCTCGCAGTACCACAAAGAGTGAAATTCACCTCCAAAGGTGTATTTGTGTCTGTTTGTGGCCGTGTGTGTGTGTGCGTGTGTGTGTGAGCCAACTTGGCGTCAGTTTGTCCTTTCCGCCGAAGAGCAGCTGTTGAATTCAACGGTGGGAAGCTGCCGAGAAACAGTGGGTGTGTTGTGGGAAAGCAGAACCGCTACACCATGTTTACCCTTCCACTGTACAAGGACAACGTCATGGTCACCTCCTGGAGTGACGCTTCGTCCTACCGGATGAAGAAGAATATGGCCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGCATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGCAACCAGGGTATCCATTCGACGCCCGCCTCGAACCTGAAGCTGTCGGAACAGATGCGCTACGCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAGCACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACCGGCTGGCCACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGAC ]
[+] EMBL BM595201 [ CCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGCATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGCAACCAGGGCATCCATTCGACGCCCGCCTCGAACCTGAAGCTGTCGGAACAGATGCGCTACGCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAGCACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACCGGCTGGCCACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGACCGACCGGCAGCGGCGGCATCTCGTGCAGCCTCGCCTCCCTGCCGGACATATCCGCCAACAACTCGCAGTTCTTTGAGGTGCTGTACGTCGGCAAGATCAAGGTGTCGCACAAGCGCGTCCCGTACACGTTCATCGACGAGGCGCTGCCAAAGTTCAAGGCGTACGATGCGGAAAAGCTGCGCCAGCAGCAGGAAGCATCGCGAAAGCAAAATGTACCGATTAATGCAGAATCGGTAAGCAGCAGTACGGCGGAAGCCGCAACGACGCAGCGCAGCAATGAGGCCGAGAATAAGGGCACAGAGT]
consensusID : consensus_4079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGGCAGTTTGCGCGAGTGCAGTAACGATCGCAGAGAGCAGCGATCACGGTTTAGTTCGTTCTCTTAATTTTCGGATGGCCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGCATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGCAACCAGGGTATCCATTCGACGCCCGCCTCGAACCTGAAGTTGTCGGAACAGATGCGTTACGCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAGCACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACAAGCTGGCCACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGACCGACCGGCAGCGGCGGCATCTCGTGCAGCCTCGCCTCCCTGCCGGACATATCCGCCAACAACTCGCAGTTTCTTCGAGGTGCTGTACGTCGGCAAGATCAAGGTGTCGCACAAGCGCGTCCCGTACACGTTCATCGACGAAGCGCTGCCAAAGTTCAAGGCGTACGATGCGGAAAAGCTGCGCCAGCAGCAGGAAGCATCGCGAAAGCAAAATGTACCGATTAATACAGAATCGGTAGGCAGCAGTAC]
[+] EMBL BM626960 [CCGGCAGTTTGCGCGAGTGCAGTAACGATCGCAGAGAGCAGCGATCACGGTTTAGTTCGTTCTCTTAATTTTCGGATGGCCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGCATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGCAACCAGGGTATCCATTCGACGCCCGCCTCGAACCTGAAGTTGTCGGAACAGATGCGTTACGCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAGCACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACAAGCTGGCCACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGACCGACCGGCAGCGGCGGCATCTCGTGCAGCCTCGCCTCCCTGCCGGACATATCCGCCAACAACTCGCAGTTTCTTCGAGGTGCTGTACGTCGGCAAGATCAAGGTGTCGCACAAGCGCGTCCCGTACACGTTCATCGACGAAGCGCTGCCAAAGTTCAAGGCGTACGATGCGGAAAAGCTGCGCCAGCAGCAGGAAGCATCGCGAAAGCAAAATGTACCGATTAATACAGAATCGGTAGGCAGCAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4079#0 CCGAAGCGCCAGTCCGATAGAGAGTGTTGCTCTTAATTGGAAGCAATTGGTGCTGATTGA 60
consensus_4079#1 ------------------------------------------------------------
consensus_4079#0 GTTCCGGGGCGCGCGCTCGCAGTACCACAAAGAGTGAAATTCACCTCCAAAGGTGTATTT 120
consensus_4079#1 ------------------------------------------------------------
consensus_4079#0 GTGTCTGTTTGTGGCCGTGTGTGTGTGTGCGTGTGTGTGTGAGCCAACTTGGCGTCAGTT 180
consensus_4079#1 ------------------------------------------------------------
consensus_4079#0 TGTCCTTTCCGCCGAAGAGCAGCTGTTGAATTCAACGGTGGGAAGCTGCCGAGAAACAGT 240
consensus_4079#1 ------------------------------------------------------------
consensus_4079#0 GGGTGTGTTGTGGGAAAGCAGAACCGCTACACCATGTTTACCCTTCCACTGTACAAGGAC 300
consensus_4079#1 ------------------------------------------CCGGCAGTTTGCGCGAGT 18
* ** * * * *
consensus_4079#0 AACGTCATGGTCACCTCCTGGAGTGA---CGCTTCGTCCTACCGGATGAAGAAGAATATG 357
consensus_4079#1 GCAGTAACGATCGCAGAGAGCAGCGATCACGGTTTAGTTCGTTCTCTTAATTTTCGGATG 78
** * * ** * * ** ** ** ** * ** ***
consensus_4079#0 GCCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGC 417
consensus_4079#1 GCCGAGCTGATGCAGCAGATGCGCGATCCGGCCACGGTTGGCGGTGGCTCCGTTGGCAGC 138
************************************************************
consensus_4079#0 ATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGC 477
consensus_4079#1 ATACCCCAGAGCATTGTGTCGTCCAGCGCGAACGCAAACGATCTGCAGAAGGCGCTCCGC 198
************************************************************
consensus_4079#0 AACCAGGGTATCCATTCGACGCCCGCCTCGAACCTGAAGCTGTCGGAACAGATGCGCTAC 537
consensus_4079#1 AACCAGGGTATCCATTCGACGCCCGCCTCGAACCTGAAGTTGTCGGAACAGATGCGTTAC 258
*************************************** **************** ***
consensus_4079#0 GCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAG 597
consensus_4079#1 GCCCAGCACGACAGTAGCCCCACGCTAGCGTATCATCTGCAGCAGCACCAACAGCAACAG 318
************************************************************
consensus_4079#0 CACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACCGGCTGGCC 657
consensus_4079#1 CACCAGCACTATCAATCATACCCGCAGCAGTACCAGAACGGCGCCCCGAACAAGCTGGCC 378
*************************************************** *******
consensus_4079#0 ACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGACCGACC 717
consensus_4079#1 ACGTCGAAAAGCTACTCCGGCGGGTTGAACCACTCGTCCGGCGGTGTGAACGGACCGACC 438
************************************************************
consensus_4079#0 GGCAGCGGCGGCATCTCGTGCAGCCTCGCCTCCCTGCCGGACATATCCGCCAACAACTCG 777
consensus_4079#1 GGCAGCGGCGGCATCTCGTGCAGCCTCGCCTCCCTGCCGGACATATCCGCCAACAACTCG 498
************************************************************
consensus_4079#0 CAGTT-CTTTGAGGTGCTGTACGTCGGCAAGATCAAGGTGTCGCACAAGCGCGTCCCGTA 836
consensus_4079#1 CAGTTTCTTCGAGGTGCTGTACGTCGGCAAGATCAAGGTGTCGCACAAGCGCGTCCCGTA 558
***** *** **************************************************
consensus_4079#0 CACGTTCATCGACGAGGCGCTGCCAAAGTTCAAGGCGTACGATGCGGAAAAGCTGCGCCA 896
consensus_4079#1 CACGTTCATCGACGAAGCGCTGCCAAAGTTCAAGGCGTACGATGCGGAAAAGCTGCGCCA 618
*************** ********************************************
consensus_4079#0 GCAGCAGGAAGCATCGCGAAAGCAAAATGTACCGATTAATGCAGAATCGGTAAGCAGCAG 956
consensus_4079#1 GCAGCAGGAAGCATCGCGAAAGCAAAATGTACCGATTAATACAGAATCGGTAGGCAGCAG 678
**************************************** *********** *******
consensus_4079#0 TACGGCGGAAGCCGCAACGACGCAGCGCAGCAATGAGGCCGAGAATAAGGGCACAGAGT 1015
consensus_4079#1 TAC-------------------------------------------------------- 681
***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||