cluster # 4098

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Anopheles gambiae
cluster # 4098 cluster # 4098 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4098#0 length = 725 sequences # 2

consensus_4098#1 length = 549 sequences # 1

consensusID : consensus_4098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 725
fasta sequence

                              [CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAGCTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCGCTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACGGGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGATATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATCGTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATCTGTTCGTGGCCGGCACGTCAAATACGGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAG]

[+] EMBL BX469479             [CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAGCTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCGCTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACGGGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGATATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATCGTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATCTGTTCGTGGCCGGCACGTCAAATACGGTACGGC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM621117             [                                                                                ccgTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCGCTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACGGGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGATATAGCACACCGGAAAGCTTGA  GCA ATCGCGACCGATGTCGCGTTGGACAGA TATCGTT GTACG ATGGACCGC TGG CACA GTTCGGGGAGGCC GGC AAGTACGGCGATCTGTTCGTGGCC GCAC TCAAAT C GTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAG]




>consensus_4098#0
CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAG
CTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCG
CTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACG
GGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGA
TATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATC
GTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATC
TGTTCGTGGCCGGCACGTCAAATACGGTACGGCATGCTCTGTATCGGTCTGTACCGATTC
CGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCG
GACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGG
CTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGC
CAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAGGACGACAACTCCTGACTATTACTGT
GTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATAT
ACCAG

consensusID : consensus_4098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [AGAATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGTATATAGCACACCGGAAAGCTTGAGCAATCGCGACCGATGTCGCGTTGGACAGATATCGTTGTACGATGGACCGCTGGCACAGTTCGGGGAGGCCGGCAAGTACGGCGATCTGTTCGTGGCCGCACTCAAATCGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAGATTGCGCTCTACATCA]

[+] EMBL AL931566             [AGAATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGTATATAGCACACCGGAAAGCTTGAGCAATCGCGACCGATGTCGCGTTGGACAGATATCGTTGTACGATGGACCGCTGGCACAGTTCGGGGAGGCCGGCAAGTACGGCGATCTGTTCGTGGCCGCACTCAAATCGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAACCGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAGATTGCGCTCTACATCA]




>consensus_4098#1
AGAATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTG
TATATAGCACACCGGAAAGCTTGAGCAATCGCGACCGATGTCGCGTTGGACAGATATCGT
TGTACGATGGACCGCTGGCACAGTTCGGGGAGGCCGGCAAGTACGGCGATCTGTTCGTGG
CCGCACTCAAATCGTACGGCATGCTCTGTATCGGTCTGTACCGATTCCGTGATACCAGTT
CGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCGGACGACTTTTCCC
TACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGGCTAGAGTATAAAC
CGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGCCAGGCGGCGGGCG
TCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTGTGTAGCGCCCTTA
CCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATATACCAGATTGCGC
TCTACATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4098#0      CCAGCCAGAATCGCCACGAGGTGATTGGATCAAGATGATGACGATCATCCGGACACTGAG 60
consensus_4098#1      ------------------------------------------------------------
                                                                                  

consensus_4098#0      CTGTATCTGACGCAACCGTTCGCTTGCGGTACAGCGTTCGCTGTGAGTGTGCTGGATTCG 120
consensus_4098#1      ------------------------------------------------------------
                                                                                  

consensus_4098#0      CTGATGTCCACGACATACTTCAATCAAAACGCCTTAACTCTAATTCGTTCGTTAATCACG 180
consensus_4098#1      ----------------------------------------------------------AG 2
                                                                                 *

consensus_4098#0      GGTGGAGCTACACCGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGGA 240
consensus_4098#1      AATNGCCCGAGGCTGGAACTAGAATTAATCCTGGCCGAAGGTGCTGGACTCCGCGGTGTA 62
                        * *  * *  * ******************************************** *

consensus_4098#0      TATAGCACACCGGAAAGCTTGAAGGCANATCGCGACCGATGTCGCGTTGGACAGAGTATC 300
consensus_4098#1      TATAGCACACCGGAAAGCTTGAGC---AATCGCGACCGATGTCGCGTTGGACAGA-TATC 118
                      **********************      *************************** ****

consensus_4098#0      GTTGGTACGAATGGACCGCGTGGCCACAGGTTCGGGGAGGCCGGGCNAAGTACGGCGATC 360
consensus_4098#1      GTTG-TACGA-TGGACCGC-TGGC-ACAG-TTCGGGGAGGCCGG--CAAGTACGGCGATC 171
                      **** ***** ******** **** **** **************   *************

consensus_4098#0      TGTTCGTGGCCGGCACGTCAAATACGGTACGGCATGCTCTGTATCGGTCTGTACCGATTC 420
consensus_4098#1      TGTTCGTGGCCG-CAC-TCAAATC--GTACGGCATGCTCTGTATCGGTCTGTACCGATTC 227
                      ************ *** ******   **********************************

consensus_4098#0      CGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCG 480
consensus_4098#1      CGTGATACCAGTTCGAGCTGTGACGCAAGTAGTAAACGCTACGTTATCACCAATCCACCG 287
                      ************************************************************

consensus_4098#0      GACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGG 540
consensus_4098#1      GACGACTTTTCCCTACTGCCAACCGATCAGGTGTTTGTGCTGATGCAGTTCGACCCCGGG 347
                      ************************************************************

consensus_4098#0      CTAGAGTATAAACCGGCGACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGC 600
consensus_4098#1      CTAGAGTATAAACCGGCAACAGTGCGTGGACCGTCCGGGGGTGGCCGAAATCAAAACAGC 407
                      ***************** ******************************************

consensus_4098#0      CAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACA-GGACGACAACTCCTGACTATTACTG 659
consensus_4098#1      CAGGCGGCGGGCGTCGGCGGCGGTGGTTCCAACAAGGACGACAACTCCTGACTATTACTG 467
                      ********************************** *************************

consensus_4098#0      TGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATA 719
consensus_4098#1      TGTAGCGCCCTTACCGATGGACCCTACTCATACATATGAACAAAAGAAACTGATTTTATA 527
                      ************************************************************

consensus_4098#0      TACCAG---------------- 725
consensus_4098#1      TACCAGATTGCGCTCTACATCA 549
                      ******