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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence
[AGGCAGAATCGGCACGTAGGGTTGTTACTATTTTCTAGAGATGATTTACGACTTTTAACACACAACAAACACGCGCACCGATACGCACTTTAAATGCCTCTCGAGAGTCTTGGGGGTGAGGTGAGGAAAATGGGAATCATGTTTTTTTTGTTTGTTTTATTATTATTATTACTGGAAGGATCGACTCCTACTTATCTTAATAGCAGAGTTTATTTATTATACATCGGAATAATTTGCTTTAGTAATACTGTAGCGACTATTTTTACTACAAGCTACTACTAGTACTATTACTACCACTACTACAGCTACTTTTACTACTAGGGGGAAGTTAGACGGTAATGGCAAATGTATACCGATATAGTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAGGGAGAGCGATTGAACTGTTTCAGAATTTAACGCGCAAAACGATAAAGCAATTCGAACCAATCCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCAC]
[+] EMBL BX468354 [AGGCAGAATCGGCACGTAGGGTTGTTACTATTTTCTAGAGATGATTTACGACTTTTAACACACAACAAACACGCGCACCGATACGCACTTTAAATGCCTCTCGAGAGTCTTGGGGGTGAGGTGAGGAAAATGGGAATCATGTTTTTTTTGTTTGTTTTATTATTATTATTACTGGAAGGATCGACTCCTACTTATCTTAATAGCAGAGTTTATTTATTATACATCGGAATAATTTGCTTTAGTAATACTGTAGCGACTATTTTTACTACAAGCTACTACTAGTACTATTACTACCACTACTACAGCTACTTTTACTACTAGGGGGAAGTTAGACGGTAATGGCAAATGTATACCGATATAGTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAGGGAGAGCGATTG ]
[+] EMBL BX609663 [ GAAGTTAGACGGTAATGGCAAATGTATACCGATATAGTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAGGGAGAGCGATTGAACTGTTTCAGAATTTAACGCGCAAAACGATAAAGCAATTCGAACCAATCCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCAC]
consensusID : consensus_4110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGTGGAAACGGTAGCTATATGCGTAAAAAAGCCGTTGTTATAACGAAGCGAAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCACAAGAAAGTACACATACACAGCAGCTACAGCAGCAAAACCACAATCAAATAAAATAACTACACT]
[+] EMBL BX608840 [CCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGTGGAAACGGTAGCTATATGCGTAAAAAAGCCGTTGTTATAACGAAGCGAAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCACAAGAAAGTACACATACACAGCAGCTACAGCAGCAAAACCACAATCAAATAAAATAACTACACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4110#0 AGGCAGAATCGGCACGTAGGGTTGTTACTATTTTCTAGAGATGATTTACGACTTTTAACA 60
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 CACAACAAACACGCGCACCGATACGCACTTTAAATGCCTCTCGAGAGTCTTGGGGGTGAG 120
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 GTGAGGAAAATGGGAATCATGTTTTTTTTGTTTGTTTTATTATTATTATTACTGGAAGGA 180
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 TCGACTCCTACTTATCTTAATAGCAGAGTTTATTTATTATACATCGGAATAATTTGCTTT 240
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 AGTAATACTGTAGCGACTATTTTTACTACAAGCTACTACTAGTACTATTACTACCACTAC 300
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 TACAGCTACTTTTACTACTAGGGGGAAGTTAGACGGTAATGGCAAATGTATACCGATATA 360
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 GTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAG 420
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 GGAGAGCGATTGAACTGTTTCAGAATTTAACGCGCAAAACGATAAAGCAATTCGAACCAA 480
consensus_4110#1 ------------------------------------------------------------
consensus_4110#0 TCCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACT 540
consensus_4110#1 -CCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACT 59
***********************************************************
consensus_4110#0 GTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTG 600
consensus_4110#1 GTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTG 119
************************************************************
consensus_4110#0 AATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGC 660
consensus_4110#1 AATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGC 179
************************************************************
consensus_4110#0 ACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAG-------------------- 700
consensus_4110#1 ACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGTGGAAACGGTAGCTATATGC 239
****************************************
consensus_4110#0 ------------------------------------------------------AGAGAG 706
consensus_4110#1 GTAAAAAAGCCGTTGTTATAACGAAGCGAAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAG 299
******
consensus_4110#0 AGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCAT 766
consensus_4110#1 AGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCAT 359
************************************************************
consensus_4110#0 GCGCGCAAAAAAAAAAAA-----CAAAAATACGCAATCTTACCTAATTATTGATTTGAAG 821
consensus_4110#1 GCGCGCAAAAAAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAG 419
****************** *************************************
consensus_4110#0 CAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGG 881
consensus_4110#1 CAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGG 479
************************************************************
consensus_4110#0 GACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCC 941
consensus_4110#1 GACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCC 539
************************************************************
consensus_4110#0 AC---------------------------------------------------------- 943
consensus_4110#1 ACAAGAAAGTACACATACACAGCAGCTACAGCAGCAAAACCACAATCAAATAAAATAACT 599
**
consensus_4110#0 -----
consensus_4110#1 ACACT 604
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||