cluster # 4146

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Anopheles gambiae
cluster # 4146 cluster # 4146 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4146#0 length = 692 sequences # 2

consensus_4146#1 length = 466 sequences # 1

consensusID : consensus_4146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [CCGAAATCACTGAAACTGTAACAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAACGATTGGTGAGTGCGCGGGTGGCGAAGGACTGGAGTGAAAACCCGTAAACTGCAGGTGTCCCAAGCAGCACCAC------CAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAACACTGATAGATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAATCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGAGAGG----GAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATATTTTATAAACTCTAGGTTTTTTTATATATAAAAATATT]

[+] EMBL BM587103             [CCGAAATCACTGAAACTGTAACAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAACGATTGGTGAGTGCGCGGGTGGCGAAGGACTGGAGTGAAAACCCGTAAACTGCAGGTGTCCCAAGCAGCACCAC      CAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAACACTGATAGATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAATCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGAGAGG    GAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATATTTTATAAACTCTAGGTTTTTTTATATATAAAAATATT]
[+] EMBL BM630509             [       ccgTGAAACTGTAAC AAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAGCGATTGGTGAGTGCGCGGGTGGCGAAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGTAAACACTGATAAATCCCGCCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAATCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAATAATCCCCCGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATAT                                     ]




>consensus_4146#0
CCGAAATCACTGAAACTGTAACAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCC
GGACAGTAGAGAACGATTGGTGAGTGCGCGGGTGGCGAAGGACTGGAGTGAAAACCCGTA
AACTGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTA
GCATTTCGTCGATATGTTCGAAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAAC
ACTGATAGATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAA
TCAAAATGCAAAATGCAAGTGAGAGCACCGTTGCAAGTGTTTTGAATTGGCGGTTAAGAA
TCGGACCTACTTTCATCAGGATGGCAATTAACATCGGTGCATCTGTACAAGGAAAGCAAC
ACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGTGTGCAGGTA
AACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCGTCAGGTGAC
CTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGAGAGGGAGAG
AGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCTATATTTTAT
AAACTCTAGGTTTTTTTATATATAAAAATATT

consensusID : consensus_4146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGAAACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAGCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTCGATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATCAATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAATGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAACGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG]

[+] EMBL BX469273             [GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGAAACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGAGCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTGTCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTCGATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATCAATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAATGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAACGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG]




>consensus_4146#1
GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGA
AACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGA
GCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTG
TCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTC
GATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATC
AATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAA
TGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAA
CGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4146#0      -----------------------------------------------CCGAAATCACTGA 13
consensus_4146#1      GGCAGAATCGNCACGAGGGGTAACTGTTGGGCGCAAATAGCAGGCCAAAAAAATCATTGA 60
                                                                        ****** ***

consensus_4146#0      AACTGTAACAAAAAAAAAAAA-CAATCCAAAACCACACACTATTAGCCGGACAGTAGAGA 72
consensus_4146#1      AACTGTAACAAAAAAAAAAAAACAATCCAAAACCACACACTATTAGCCGGACAGTAGAGA 120
                      ********************* **************************************

consensus_4146#0      ACGATTGGTGAGTGCGCGGGTGGCGA-AGGACTGGAGTGAAAACCCGTAAACTGCAGGTG 131
consensus_4146#1      GCGATTGGTGAGTGCGCGGGTGGCGACAGGTCTGGAGTGAAACCCCGTGAACCGCAGGTG 180
                       ************************* *** *********** ***** *** *******

consensus_4146#0      TCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAG-CATTTCGTC 190
consensus_4146#1      TCCCAAGCAGCACCACCAGCAGCAGCAGCAGGTAAACCCCATTAAACTAGGCATTTCGTC 240
                      ************************************************** *********

consensus_4146#0      GATATGTTCGA-AGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAA-ACA-CTGATA 247
consensus_4146#1      GATATGTTCGACAGCTGTACGCTCGAAGAAGAGAAGGGAAAAATAGCAAGACAGCTGATC 300
                      *********** ************************************* *** ***** 

consensus_4146#0      GATCCCGCCACGCGTTCAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAAAA- 306
consensus_4146#1      AATCCCGNCACGCGTTTAAAAGCTTCAAACAGTACAGTCCTCTCACCCTCTAATCAACAA 360
                       ****** ******** **************************************** * 

consensus_4146#0      --TGCAAAATGCA--AGTGAG-AGCACCGTT-GCAAG---TGTTTTGAATTGGCGGTTAA 357
consensus_4146#1      TGTACAAANTGCACAGGTGAGGAGCACCGTTTGCAAGGTGTNGTCTGAATTGGCGGTTAA 420
                        * **** ****   ***** ********* *****   *  * ***************

consensus_4146#0      GAA--TCGGACCTACTTT-CATCAG-GATGGC--AATTAACATCGGTGCATCTGTACAAG 411
consensus_4146#1      CGAATTCGGACCTACTTNGCATCAGCGATGGCCAAGTTAACATCGG-------------- 466
                        *  ************  ****** ******  * **********              

consensus_4146#0      GAAAGCAACACCTACACACAAGTGCTGCAGCGAGAGAGGGAGAGAGACAGAGAGGGTAGT 471
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      GTGCAGGTAAACTTAAATCTAGTCAAAAGTCCAGCAATGGAAAGAAGCAACACGAAAGCG 531
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      TCAGGTGACCTAACATTGGAGACAATTTAGAAGGAATAACTATCCCCCGGCAGAAAGAGA 591
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      GAGGGAGAGAGAGAGCAAGTGGCATGCAGAGATGAAACATGCAAGATATGTTTTTTGCCT 651
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      ATATTTTATAAACTCTAGGTTTTTTTATATATAAAAATATT 692
consensus_4146#1      -----------------------------------------