cluster # 4155

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Anopheles gambiae
cluster # 4155 cluster # 4155 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4155#0 length = 701 sequences # 2

consensus_4155#1 length = 341 sequences # 1

consensusID : consensus_4155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 701
fasta sequence

                              [CCGGTGAATGTAAACAGGGGGAAAACAAAACGAAAGTGTGTTTTTTGTCTGTAATCGGTATCGAAATATCTGTGTTAAAAGTAGTTTGTCTGTTCGTTTTTGGGTGTGCATCTAACGCGCAACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCTGCGGCTGAAGCTGCTCGAGTTCGGCCTGTCCAACATGCCGGTCACAAGTACGACGCGGAAGGTGCTGATCAAAAAGCTACGAAATCACATCTCCACTAACGGAGGAGGTGGAGGCGCTGGGAAGGCACGGCGTGAGACAATCCACCTTACAAAGTACTCTTCCGACGAGGATAGTGAGCCCGTCAGCAGCCAACCCGCTGGTACGAAGAAAAGCGCCGTGACCGCGAAAAAGGAGCAGACAAATCGTCGAGCAACGATTGCTAGCGCTGGGACCGCAACAGCATCAACGAAACTGCCCAAATTCATTTCTGCATCACAACCGACACCGAAGGTCTCCGAAACATTGCCACC-GGAGCCGGGATCTGCGTCGAAGCGTCGATCGGGAAGAGTTACCCCGGTGAAGGATAAGGATGTTGCATCATCCGCAGCGTCCACGAAAGCAGCACCGAAAGTACCGGCAATACTGGAGGACTCGGACGACGATATGGTTCCGCTGACACAGTTGACCCAGCGTGAGCGCAAATCGAAGAGCCCTTCGCT]

[+] EMBL BM646890             [CCGGTGAATGTAAACAGGGGGAAAACAAAACGAAAGTGTGTTTTTTGTCTGTAATCGGTATCGAAATATCTGTGTTAAAAGTAGTTTGTCTGTTCGTTTTTGGGTGTGCATCTAACGCGCAACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCTGCGGCTGAAGCTGCTCGAGTTCGGCCTGTCCAACATGCCGGTCACAAGTACGACGCGGAAGGTGCTGATCAAAAAGCTACGAAATCACATCTCCACTAACGGAGGAGGTGGAGGCGCTGGGAAGGCACGGCGTGAGACAATCCACCTTACAAAGTACTCTTCCGACGAGGATAGTGAGCCCGTCAGCAGCCAACCCGCTGGTACGAAGAAAAGCGCCGTGACCGCGAAAAAGGAGCAGACAAATCGTCGAGCAACGATTGCTAGCGCTGGGACCGCAACAGCATCAACGAAACTGCCCAAATTCATTTCTGCATCACAACCGACACCGAAGGTCTCCGAAACATTGCCACC GGAGCCGGGATCTGCGTCGAAGCGTCGATCGGGAAGAGTTACCCCGGTGAAGGATAAGGATGTTGCATCATCCGCAGCGTCCACGAAAGCAGCACCGAAAGTACCGGCAATACTGGAGGACTCGGACGACGATATGGTTCCGCTGACACAGTTGACCCAGCGTGAGCGCAAATCGAAGAGCCCTTCGCT]
[+] EMBL BM595411             [               ccGGGGAAAACAAAACGAAAGTGTGTTTTTTGTCTGTAATCGGTATCGAAATATCTGTGTTAAAAGTAGTTTGTCTGTTCGTTTTTGGGTGTGCATCTAACGCGCAACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCTGCGGCTGAAGCTGCTCGAGTTCGGCCTGTCCAACATGCCGGTCACAAGTACGACGCGGAAGGTGCTGATCAAAAAGCTACGAAATCACATCTCCACTAACGGAGGAGGTGGAGGCGCTGGGAAGGCACGGCGTGAGACAATCCACCTTACAAAGTACTCTTCCGACGAGGATAGTGAGCCCGTCAGCAGCCAACCCGCTGGTACGAAGAAAAGCGCCGTGACCGCGAAAAAGGAGCAGACAAATCGTCGAGCAACGATTGCTAGCGCTGGGACCGCAACAGCATCAACGAAACTGCCCAAATTCATTTCTGCATCACAACCGACACCGAAGGTCTCCGAAACATTGCCACCGGGAGCCGGGATCTGCGTCGAAGCGTCGATCGGGAAGAGTTACCCCGGTGAAGGATAAGGATGTTGCATCATCCGCAGCGTCCACGAAAGCAGCACCGAAAGTACCGGCAATACTGGAGGACTCGGACGACGATATGG                                                    ]




>consensus_4155#0
CCGGTGAATGTAAACAGGGGGAAAACAAAACGAAAGTGTGTTTTTTGTCTGTAATCGGTA
TCGAAATATCTGTGTTAAAAGTAGTTTGTCTGTTCGTTTTTGGGTGTGCATCTAACGCGC
AACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCTGCGGCTGAAGCTGCTCGAG
TTCGGCCTGTCCAACATGCCGGTCACAAGTACGACGCGGAAGGTGCTGATCAAAAAGCTA
CGAAATCACATCTCCACTAACGGAGGAGGTGGAGGCGCTGGGAAGGCACGGCGTGAGACA
ATCCACCTTACAAAGTACTCTTCCGACGAGGATAGTGAGCCCGTCAGCAGCCAACCCGCT
GGTACGAAGAAAAGCGCCGTGACCGCGAAAAAGGAGCAGACAAATCGTCGAGCAACGATT
GCTAGCGCTGGGACCGCAACAGCATCAACGAAACTGCCCAAATTCATTTCTGCATCACAA
CCGACACCGAAGGTCTCCGAAACATTGCCACCGGAGCCGGGATCTGCGTCGAAGCGTCGA
TCGGGAAGAGTTACCCCGGTGAAGGATAAGGATGTTGCATCATCCGCAGCGTCCACGAAA
GCAGCACCGAAAGTACCGGCAATACTGGAGGACTCGGACGACGATATGGTTCCGCTGACA
CAGTTGACCCAGCGTGAGCGCAAATCGAAGAGCCCTTCGCT

consensusID : consensus_4155#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [ATCGCCCCCGAGGGGAAAACAAACGAAAGTGTAGTTTTTGTCTGTAATCGGTATCGAAATATCTGTGTTAAAGTAGTTTGTCTGTTTGTTTTTGGGTGTGCATCTAACGCGCAACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCCTGGCCGGCCTTGGAAGCCCTTTGGCTCGAGTTTTTCGGCCTGGTCCAACATGCCGGTCACAAGCACGACGCGGAAGGTGCTGATCAAAAAGCTACGAAATCACATCTCCACCAACGGAGGAGGCGGAGGCACAGGAAAGGCACGGCGTGAGACAAATCCACCTTACAAAGTACTCTTCCGACGAGGAT]

[+] EMBL AL932686             [ATCGCCCCCGAGGGGAAAACAAACGAAAGTGTAGTTTTTGTCTGTAATCGGTATCGAAATATCTGTGTTAAAGTAGTTTGTCTGTTTGTTTTTGGGTGTGCATCTAACGCGCAACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCCTGGCCGGCCTTGGAAGCCCTTTGGCTCGAGTTTTTCGGCCTGGTCCAACATGCCGGTCACAAGCACGACGCGGAAGGTGCTGATCAAAAAGCTACGAAATCACATCTCCACCAACGGAGGAGGCGGAGGCACAGGAAAGGCACGGCGTGAGACAAATCCACCTTACAAAGTACTCTTCCGACGAGGAT]




>consensus_4155#1
ATCGCCCCCGAGGGGAAAACAAACGAAAGTGTAGTTTTTGTCTGTAATCGGTATCGAAAT
ATCTGTGTTAAAGTAGTTTGTCTGTTTGTTTTTGGGTGTGCATCTAACGCGCAACATGGC
AGATAATTTCGATGATATGTCGAACGATCAGCCTGGCCGGCCTTGGAAGCCCTTTGGCTC
GAGTTTTTCGGCCTGGTCCAACATGCCGGTCACAAGCACGACGCGGAAGGTGCTGATCAA
AAAGCTACGAAATCACATCTCCACCAACGGAGGAGGCGGAGGCACAGGAAAGGCACGGCG
TGAGACAAATCCACCTTACAAAGTACTCTTCCGACGAGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4155#0      CCGGTGAATGTAAACAGGGGGAAAACAAAACGAAAGTGTGTTTTTTGTCTGTAATCGGTA 60
consensus_4155#1      ------ATCGCCCCCGAGGGGAAAACAAA-CGAAAGTGTAGTTTTTGTCTGTAATCGGTA 53
                            *  *    *  ************ *********  *******************

consensus_4155#0      TCGAAATATCTGTGTTAAAAGTAGTTTGTCTGTTCGTTTTTGGGTGTGCATCTAACGCGC 120
consensus_4155#1      TCGAAATATCTGTGTTAAA-GTAGTTTGTCTGTTTGTTTTTGGGTGTGCATCTAACGCGC 112
                      ******************* ************** *************************

consensus_4155#0      AACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCTG---CGGCT---GAAGCT- 173
consensus_4155#1      AACATGGCAGATAATTTCGATGATATGTCGAACGATCAGCCTGGCCGGCCTTGGAAGCCC 172
                      ****************************************     ****    *****  

consensus_4155#0      ----GCTCGAGTT---CGGCCTG-TCCAACATGCCGGTCACAAGTACGACGCGGAAGGTG 225
consensus_4155#1      TTTGGCTCGAGTTTTTCGGCCTGGTCCAACATGCCGGTCACAAGCACGACGCGGAAGGTG 232
                          *********   ******* ******************** ***************

consensus_4155#0      CTGATCAAAAAGCTACGAAATCACATCTCCACTAACGGAGGAGGTGGAGGCGCTGGGAAG 285
consensus_4155#1      CTGATCAAAAAGCTACGAAATCACATCTCCACCAACGGAGGAGGCGGAGGCACAGGAAAG 292
                      ******************************** *********** ****** * ** ***

consensus_4155#0      GCACGGCGTGAGACAA-TCCACCTTACAAAGTACTCTTCCGACGAGGATAGTGAGCCCGT 344
consensus_4155#1      GCACGGCGTGAGACAAATCCACCTTACAAAGTACTCTTCCGACGAGGAT----------- 341
                      **************** ********************************           

consensus_4155#0      CAGCAGCCAACCCGCTGGTACGAAGAAAAGCGCCGTGACCGCGAAAAAGGAGCAGACAAA 404
consensus_4155#1      ------------------------------------------------------------
                                                                                  

consensus_4155#0      TCGTCGAGCAACGATTGCTAGCGCTGGGACCGCAACAGCATCAACGAAACTGCCCAAATT 464
consensus_4155#1      ------------------------------------------------------------
                                                                                  

consensus_4155#0      CATTTCTGCATCACAACCGACACCGAAGGTCTCCGAAACATTGCCACCGGAGCCGGGATC 524
consensus_4155#1      ------------------------------------------------------------
                                                                                  

consensus_4155#0      TGCGTCGAAGCGTCGATCGGGAAGAGTTACCCCGGTGAAGGATAAGGATGTTGCATCATC 584
consensus_4155#1      ------------------------------------------------------------
                                                                                  

consensus_4155#0      CGCAGCGTCCACGAAAGCAGCACCGAAAGTACCGGCAATACTGGAGGACTCGGACGACGA 644
consensus_4155#1      ------------------------------------------------------------
                                                                                  

consensus_4155#0      TATGGTTCCGCTGACACAGTTGACCCAGCGTGAGCGCAAATCGAAGAGCCCTTCGCT 701
consensus_4155#1      ---------------------------------------------------------