cluster # 417

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Anopheles gambiae
cluster # 417 cluster # 417 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_417#0 length = 660 sequences # 1

consensus_417#1 length = 547 sequences # 1

consensusID : consensus_417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGCGACGGCGAACTGCGACGGACTCGCCTGCTCCGCTGCAAACGTAAACAGTGCACGGGTGCGAGTGCCACGGTCCAGAACACGACGACGAGGAGAACCCCCAGCAAAAACCCGGTGGAGTCCCGCGCATCGCTTCGAACCAGTCAGGCACAAGATTATTTTCTCCTGTAGGGCGCATCTCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAGTTCCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGCGAGATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACGGCACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAACAGGTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACACTACGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGGTAATGAATCGGCCGTCTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTGATCGAGCGCGCCTTCAAGTGTCTCGGCTCGGACCTGCAGGAGTTTCTCGGCTCGCTCGACGG]

[+] EMBL BM624740             [CCGCGACGGCGAACTGCGACGGACTCGCCTGCTCCGCTGCAAACGTAAACAGTGCACGGGTGCGAGTGCCACGGTCCAGAACACGACGACGAGGAGAACCCCCAGCAAAAACCCGGTGGAGTCCCGCGCATCGCTTCGAACCAGTCAGGCACAAGATTATTTTCTCCTGTAGGGCGCATCTCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAGTTCCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGCGAGATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACGGCACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAACAGGTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACACTACGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGGTAATGAATCGGCCGTCTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTGATCGAGCGCGCCTTCAAGTGTCTCGGCTCGGACCTGCAGGAGTTTCTCGGCTCGCTCGACGG]




>consensus_417#0
CCGCGACGGCGAACTGCGACGGACTCGCCTGCTCCGCTGCAAACGTAAACAGTGCACGGG
TGCGAGTGCCACGGTCCAGAACACGACGACGAGGAGAACCCCCAGCAAAAACCCGGTGGA
GTCCCGCGCATCGCTTCGAACCAGTCAGGCACAAGATTATTTTCTCCTGTAGGGCGCATC
TCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAGTT
CCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGCGA
GATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACGGC
ACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAACAG
GTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACACTA
CGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGGTAATGAATCGGCCGT
CTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTGAT
CGAGCGCGCCTTCAAGTGTCTCGGCTCGGACCTGCAGGAGTTTCTCGGCTCGCTCGACGG

consensusID : consensus_417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CCGGCGCTTTACAACATACAATACCACCACACGTCCCAACTGGTCTTCAAGGCTCTTCAGATCTCAATATCTTGCACGAACAACTTCCAGATTATTTTCTCCTGTAGGGCGCATCTCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAGTTCCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGCGAGATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACGGCACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAACAGGTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACACTACGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGAATCGGCCGTCTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTGATCGAGCGCGCCTTCAAGTG]

[+] EMBL BM645400             [CCGGCGCTTTACAACATACAATACCACCACACGTCCCAACTGGTCTTCAAGGCTCTTCAGATCTCAATATCTTGCACGAACAACTTCCAGATTATTTTCTCCTGTAGGGCGCATCTCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAGTTCCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGCGAGATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACGGCACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAACAGGTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACACTACGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGAATCGGCCGTCTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTGATCGAGCGCGCCTTCAAGTG]




>consensus_417#1
CCGGCGCTTTACAACATACAATACCACCACACGTCCCAACTGGTCTTCAAGGCTCTTCAG
ATCTCAATATCTTGCACGAACAACTTCCAGATTATTTTCTCCTGTAGGGCGCATCTCCCA
AAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAGTTCCAGC
GCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGCGAGATAC
CGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACGGCACCGT
CGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAACAGGTGGC
CCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACACTACGACT
ACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGAATCGGCCGTCTCGGAGATAC
TGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTGATCGAGCGCGCCT
TCAAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_417#0      CCGCGACGGCGAACTGCGACGGACTCGCCTGCTCCGCTGCAAACGTAAACAGTGCACGGG 60
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      TGCGAGTGCCACGGTCCAGAACACGACGACGAGGAGAACCCCCAGCAAAAACCCGGTGGA 120
consensus_417#1      -----CCGGCGCTTTACAACATACAAT-ACCACCACACGTCCCAACTGGTCTTCAAGGCT 54
                            * * *  * **  * ** *  ** *  * *   **** *       *   *  

consensus_417#0      GTCCCG--CGCATCGCTTCGAACCAGTCAGGCACAAGATTATTTTCTCCTGTAGGGCGCA 178
consensus_417#1      CTTCAGATCTCAATATCTTGCACGAA-CAACTTCCAGATTATTTTCTCCTGTAGGGCGCA 113
                      * * *  * **     * * ** *  **    * *************************

consensus_417#0      TCTCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAG 238
consensus_417#1      TCTCCCAAAGCCCCTTTCGCCATGGCCTGCCCGTTTGCGAAGCACATCTCGAGCGAGCAG 173
                     ************************************************************

consensus_417#0      TTCCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGC 298
consensus_417#1      TTCCAGCGCCAGCCGTCCATCGCCGAGGCCCACAACTGGAACCTGGACGAGGACCTGAGC 233
                     ************************************************************

consensus_417#0      GAGATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACG 358
consensus_417#1      GAGATACCGGGCGATGCGCTGACGCTCACGCATCTGAACGCCGCGATCCAGCTGCTGACG 293
                     ************************************************************

consensus_417#0      GCACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAAC 418
consensus_417#1      GCACCGTCGATCGACAACGTCCACGAGGCACTGATGTCACTGATCGGCAAGTACAGCAAC 353
                     ************************************************************

consensus_417#0      AGGTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACAC 478
consensus_417#1      AGGTGGCCCGGCCTGTCAAAGCTCAAGAGCGAACGTTCGGAGCTGTCCATCTACCCACAC 413
                     ************************************************************

consensus_417#0      TACGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATGGTAATGAATCGGCC 538
consensus_417#1      TACGACTACCTGGCGGACATTCAGGACAATCTGACGCAGATCGATG------AATCGGCC 467
                     **********************************************      ********

consensus_417#0      GTCTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTG 598
consensus_417#1      GTCTCGGAGATACTGGTCCTGCTCGGCGAGGAGCTGATCCAGACGGCGTGCGTCGGCGTG 527
                     ************************************************************

consensus_417#0      ATCGAGCGCGCCTTCAAGTGTCTCGGCTCGGACCTGCAGGAGTTTCTCGGCTCGCTCGAC 658
consensus_417#1      ATCGAGCGCGCCTTCAAGTG---------------------------------------- 547
                     ********************                                        

consensus_417#0      GG 660
consensus_417#1      --