cluster # 4180

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Anopheles gambiae
cluster # 4180 cluster # 4180 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4180#0 length = 847 sequences # 2

consensus_4180#1 length = 689 sequences # 1

consensusID : consensus_4180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence

                              [TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATCGATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATGACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCTGCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGGAAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCTTTA-CCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCATAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCAAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGTGGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGCGAAG-TGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACCCACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCC-TATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAAT]

[+] EMBL CNS08U55             [TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATCGATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATGACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCTGCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGGAAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCTTTA CCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCATAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCAAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGTGGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGCGAAG TGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACCCACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCC TATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAAT]
[-] EMBL CNS08U54             [          TTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATCGATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCG GTTAACCGCCAGCTGGCCGATGACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCTGCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGGAAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCTTTAGCCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCATAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCAAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGTGGTTGTGCGTCAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGCGAAGCTGCTGGAAGCCAAAATCGACCAGC CCTTCAGCGAATCGCCCACCGACTTCAACCCACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTTATG TGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAAT]




>consensus_4180#0
TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATC
GATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATG
ACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCT
GCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGG
AAAGGGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTCT
TTACCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCAT
AGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATCA
AAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTGT
GGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAGC
GAAGTGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACCC
ACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTGA
TCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCC
CTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGG
AATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTGG
TGCTAAT

consensusID : consensus_4180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CATGCCGAGCAGCGGGAATATCTTGAAGAACCGTTCCACCGGACGCGAGATCGTCGCGCTTGACCGCTTCGTCGAACTTTTGGTTTACCATTTGCTGCATCTGGACCGTCGCCTGCTCGAGCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCCGTCTTCTGGAGCAGCGTTTTGTCCATCGAAAGGAAGCGATTCACGTGCCCAGCGCCCTGCTCAAAGTCTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTGCAGATCGATCAGATCGTGAACCCGCTGCTGACACTCCGACACACGACTCCGCGCCTCATCCAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAATATCACTATCCTCGATGAATGCGTTTAATTTTAACATTTTTTACGCTAGGAAACTAACCGAAATTATTCTAAATAATACGGACTGTTTGCGAATGTTTACATTTCGG]

[-] EMBL BM593077             [CATGCCGAGCAGCGGGAATATCTTGAAGAACCGTTCCACCGGACGCGAGATCGTCGCGCTTGACCGCTTCGTCGAACTTTTGGTTTACCATTTGCTGCATCTGGACCGTCGCCTGCTCGAGCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCCGTCTTCTGGAGCAGCGTTTTGTCCATCGAAAGGAAGCGATTCACGTGCCCAGCGCCCTGCTCAAAGTCTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTGCAGATCGATCAGATCGTGAACCCGCTGCTGACACTCCGACACACGACTCCGCGCCTCATCCAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAATATCACTATCCTCGATGAATGCGTTTAATTTTAACATTTTTTACGCTAGGAAACTAACCGAAATTATTCTAAATAATACGGACTGTTTGCGAATGTTTACATTTCGG]




>consensus_4180#1
CATGCCGAGCAGCGGGAATATCTTGAAGAACCGTTCCACCGGACGCGAGATCGTCGCGCT
TGACCGCTTCGTCGAACTTTTGGTTTACCATTTGCTGCATCTGGACCGTCGCCTGCTCGA
GCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCCGTCTTCT
GGAGCAGCGTTTTGTCCATCGAAAGGAAGCGATTCACGTGCCCAGCGCCCTGCTCAAAGT
CTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTGCAGATCGATCAGATCGT
GAACCCGCTGCTGACACTCCGACACACGACTCCGCGCCTCATCCAGCCTTCGCACTTTGG
CGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTGATCATGTCCGAGAGCTGGCGGCTTT
TGTCCGACACCACGCTCAGCCCGCTAAGGGCCACCCCTATGCTGCGCATCTTCGCCTCGA
GCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGGGAATCGATTTGTTGCTCTTTCGATG
TTATCCGTTGGCATACTTCTTCTATGCCTTCCGTGGTGCTAATATCACTATCCTCGATGA
ATGCGTTTAATTTTAACATTTTTTACGCTAGGAAACTAACCGAAATTATTCTAAATAATA
CGGACTGTTTGCGAATGTTTACATTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4180#0      TTGCTAGCATTTTATTAACGGTTACAATTTTATCTTTTTGATATCCTCCATTTTAAAATC 60
consensus_4180#1      ------------------------------------------------------------
                                                                                  

consensus_4180#0      GATCCTAAGCGCCAAAATGGAACGTGCTTCGTTGGCGCGTTAACCGCCAGCTGGCCGATG 120
consensus_4180#1      ------------------------------------------------------------
                                                                                  

consensus_4180#0      ACGATTCCCAATACTCCGGCAGCTCGGAAACACTCTCCAGGTTCAGTATCGTCCCCATCT 180
consensus_4180#1      ------------------------------------------------------------
                                                                                  

consensus_4180#0      GCAGCAACTTTGCCAGCTTGTCCCTCACAGACCACGATGTCGCGCCCGTCAGAAACGAGG 240
consensus_4180#1      -------------------------------------------------------CATGC 5
                                                                             *  * 

consensus_4180#0      AAAG-GGCACGAATTTCCTGATCCAGTACCAATCCTCCCAACCGATTAAACGTCGTTTTC 299
consensus_4180#1      CGAGCAGCGGGAATATCTTGA---AGAACCGTTCCACCGGAC-GCGAGATCGTCGCG--C 59
                        **  **  **** ** ***   ** ***  *** **  ** *    * *****    *

consensus_4180#0      TTTACCGCGCGCTCCATTCGCGCCGTTATTTCCGTCGTCACAATACTGACCAGCGCGTCA 359
consensus_4180#1      TTGACCGCTTCGTCGAACTTT--TGGTTTACCATTTGCTGCA-TCTGGACCGTCGCC--- 113
                      ** *****    ** *        * * *  *  * *   ** *   ****  ***    

consensus_4180#0      TAGTTGCGCGGCGTCAGAGCCACCTTGAACGAGTTGAGCAGCCCATCGATCTGCACGATC 419
consensus_4180#1      TGCTCGAGCGTCGAAACCGCCTGGCTGACGGACGTTATCGATCCGCTCACATCATCGGCC 173
                      *  * * *** **  *  ***    ***  **  * * *   **    *  *   **  *

consensus_4180#0      AAAAACTGCACAAACGTTTCGCTCGCCTCGTAGGTGGCCAGCTCCTCCTCCGTTAGGTTG 479
consensus_4180#1      GTCTTCTGGAGCAGCGTTTTGTCCATC-----GAAAGGAAGCGATTCACGTGCCCAGC-- 226
                           *** *  * ***** *  *  *     *   *  ***   **    *    *   

consensus_4180#0      TGGTTGTGCGTTAGAAACTGATCCACCCACGGGTGTAACCTCGGTTTGATGGCGGACGAG 539
consensus_4180#1      --GCCCTGC-TCAAAGTCTTCCTCCCGGATTGCACTCATCACGCCCTGGCTGCAGAGCTG 283
                        *   *** * * *  **    * *  *  *   * * * **   **   ** **   *

consensus_4180#0      CGAAGTGCTGGAAGCCAAAATCGACCAGCGCCTTCAGCGAATCGCCCACCGACTTCAACC 599
consensus_4180#1      CAGATCGATCAGATCGTGAACC------CGCTGCTGACACTCCGACACACGACTCCG--C 335
                      *  *  * *   * *   ** *      ***      *    ** *   ***** *   *

consensus_4180#0      CACCCAGACAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTTTTGCCGTGTGATTG 659
consensus_4180#1      GCCTCATCCAGCCTTCGCACTTTGGCGCTTACACTCTCCGCCAGTGTTGCCGTGTGATTG 395
                        * **  ************************************* **************

consensus_4180#0      ATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACC 719
consensus_4180#1      ATCATGTCCGAGAGCTGGCGGCTTTTGTCCGACACCACGCTCAGCCCGCTAAGGGCCACC 455
                      ************************************************************

consensus_4180#0      CCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGG 779
consensus_4180#1      CCTATGCTGCGCATCTTCGCCTCGAGCTGGCACTGTTGCGACAGAATCTCCTCCAGCCGG 515
                      ************************************************************

consensus_4180#0      GAATCGATTTGTTGCTCTTTCGATGTAATCCGTTGGCATACTTCTTCTATGCCTTCCGTG 839
consensus_4180#1      GAATCGATTTGTTGCTCTTTCGATGTTATCCGTTGGCATACTTCTTCTATGCCTTCCGTG 575
                      ************************** *********************************

consensus_4180#0      GTGCTAAT---------------------------------------------------- 847
consensus_4180#1      GTGCTAATATCACTATCCTCGATGAATGCGTTTAATTTTAACATTTTTTACGCTAGGAAA 635
                      ********                                                    

consensus_4180#0      ------------------------------------------------------
consensus_4180#1      CTAACCGAAATTATTCTAAATAATACGGACTGTTTGCGAATGTTTACATTTCGG 689