cluster # 4184

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Anopheles gambiae
cluster # 4184 cluster # 4184 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4184#0 length = 967 sequences # 2

consensus_4184#1 length = 440 sequences # 1

consensusID : consensus_4184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 967
fasta sequence

                              [CCGCGCGGGTTCCGCGAGCCGAGCCGGTCGCCCTCGCCGTCGGCCGAGCGGCTGCAGGGCGGCCGGATTGCGGCGGACGAGGAGATTGACGATCTGGGCGGCAAGACGGAGCATGAGATTGCGGAAATGATTGCTGAGCGGGAGGCGAAAGCGCGGGCCACGATACTGGAGATCGTGGGCGACATCCCGGACGCGGACATTGCGCCGCCGGAGAACGTGCTGTTCGTGTGCAAGCTGAACCCGGTCACGACGGACGACGATCTGCAGATAATCTTCAGCCGGTTCGGCAAGATCGTCGGGTGCGAGGTGATACGGGACAAGCTGACCGGCGACTCGCTGCAGTACGCGTTCATCGAGTTCGAGAACCAAAAGTCGTGCGAGGACGCTTACTTTAAGATGGACAATGTGCTGATCGACGATCGCCGCATACACGTCGACTTTTCGCAGTCCGTGTCGAAGATCAAGTGGCGCGGCAAGGGGCGGGGAATCGAGTTCAAGGACGGGGCCGATAAGCGGTCGTTCAAGGATTACGATCGTAAGAAGCAGCAGCAGCAGCAAACGAATCGTAACGGAGGCGGATCCAACAAGCGGTCGAATGCTTCGCCGAAAAAGGAACGTGAGCAGGAGCAGGAACAGAAGGGGCGCTCCCGGTCCGATTCAGGATCTCGTTCCCGATCACGTTCTCGATCGCGTTCCAAATCGCGCTCCAAATCGCGTTCCCAATCGCGTTCCAGATCTCGTTCTAGGTCTCGTTCCAGATCCCGCTCCAGGTCCGGGTCTCGTTCGCGTGCCAGAAAGGTGGACCGTCGTCAGCGTAGCCGTTCGCGCGACCATATGCGCGATCGGGATAGAAACCGCCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGCCGAAAGCCGAACCTGACCGAACGCAACTCCGCCTACATGGAGCAGCGCAACGGGCGAGACATTCGCATCAACC]

[+] EMBL BM632510             [CCGCGCGGGTTCCGCGAGCCGAGCCGGTCGCCCTCGCCGTCGGCCGAGCGGCTGCAGGGCGGCCGGATTGCGGCGGACGAGGAGATTGACGATCTGGGCGGCAAGACGGAGCATGAGATTGCGGAAATGATTGCTGAGCGGGAGGCGAAAGCGCGGGCCACGATACTGGAGATCGTGGGCGACATCCCGGACGCGGACATTGCGCCGCCGGAGAACGTGCTGTTCGTGTGCAAGCTGAACCCGGTCACGACGGACGACGATCTGCAGATAATCTTCAGCCGGTTCGGCAAGATCGTCGGGTGCGAGGTGATACGGGACAAGCTGACCGGCGACTCGCTGCAGTACGCGTTCATCGAGTTCGAGAACCAAAAGTCGTGCGAGGACGCTTACTTTAAGATGGACAATGTGCTGATCGACGATCGCCGCATACACGTCGACTTTTCGCAGTCCGTGTCGAAGATCAAGTGGCGCGGCAAGGGGCGGGGAATCGAGTTCAAGGACGGGGCCGATAAGCGGTCGTTCAAGGATTACGATCGTAAGAAGCAGCAGCAGCAGCAAACGAATCGTAACGGAGGCGGATCCAACAAGCGGTCGAATGCTTCGCCGAAAAAGGAACGTGAGCAGGAGCAGGAACAG                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX624696             [                                                                                                                                                                                           CGGACGCGGACATTGCGCCGCCGGAGAACGTGCTGTTCGTGTGCAAGCTGAACCCGGTCACGACGGACGACGATCTGCAGATCATCTTCAGCCGGTTCGGCAAGATCGTCGGGTGCGAGGTGATACGGGACAAGCTGACCGGCGACTCGCTGCAGTACGCGTTCATCGAGTTCGAGAACCAAAAGTCGTGCGAGGACGCTTACTTTAAGATGGACAACGTGCTGATCGACGATCGCCGCATACACGTCGACTTTTCGCAGTCCGTATCGAAGATCAAGTGGCGCGGCAAGGGCCGGGGAATCGAGTTCAAGGATGGGGCCGATAAGCGGTCGTTCAAGGATTACGATCGTAAAAAGCAGCAGCAGCAGCAAACGAATCGTAACGGAGGCGGATCCAACAAGCGGTCGAATGTTTCGCCGAAAAGGGAACGTGAGCGGGAGCAGGAACAGAAGGGGCGCTCCCGGTCCGATTCAGGATCTCGTTCCCGATCACGTTCTCGATCGCGTTCCAAATCGCGCTCCAAATCGCGTTCCCAATCGCGTTCCAGATCTCGTTCTAGGTCTCGTTCCAGATCCCGCTCCAGGTCCGGGTCTCGTTCGCGTGCCAGAAAGGTGGACCGTCGTCAGCGTAGCCGTTCGCGCGACCATATGCGCGATCGGGATAGAAACCGCCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGCCGAAAGCCGAACCTGACCGAACGCAACTCCGCCTACATGGAGCAGCGCAACGGGCGAGACATTCGCATCAACC]




>consensus_4184#0
CCGCGCGGGTTCCGCGAGCCGAGCCGGTCGCCCTCGCCGTCGGCCGAGCGGCTGCAGGGC
GGCCGGATTGCGGCGGACGAGGAGATTGACGATCTGGGCGGCAAGACGGAGCATGAGATT
GCGGAAATGATTGCTGAGCGGGAGGCGAAAGCGCGGGCCACGATACTGGAGATCGTGGGC
GACATCCCGGACGCGGACATTGCGCCGCCGGAGAACGTGCTGTTCGTGTGCAAGCTGAAC
CCGGTCACGACGGACGACGATCTGCAGATAATCTTCAGCCGGTTCGGCAAGATCGTCGGG
TGCGAGGTGATACGGGACAAGCTGACCGGCGACTCGCTGCAGTACGCGTTCATCGAGTTC
GAGAACCAAAAGTCGTGCGAGGACGCTTACTTTAAGATGGACAATGTGCTGATCGACGAT
CGCCGCATACACGTCGACTTTTCGCAGTCCGTGTCGAAGATCAAGTGGCGCGGCAAGGGG
CGGGGAATCGAGTTCAAGGACGGGGCCGATAAGCGGTCGTTCAAGGATTACGATCGTAAG
AAGCAGCAGCAGCAGCAAACGAATCGTAACGGAGGCGGATCCAACAAGCGGTCGAATGCT
TCGCCGAAAAAGGAACGTGAGCAGGAGCAGGAACAGAAGGGGCGCTCCCGGTCCGATTCA
GGATCTCGTTCCCGATCACGTTCTCGATCGCGTTCCAAATCGCGCTCCAAATCGCGTTCC
CAATCGCGTTCCAGATCTCGTTCTAGGTCTCGTTCCAGATCCCGCTCCAGGTCCGGGTCT
CGTTCGCGTGCCAGAAAGGTGGACCGTCGTCAGCGTAGCCGTTCGCGCGACCATATGCGC
GATCGGGATAGAAACCGCCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGCCGAAAG
CCGAACCTGACCGAACGCAACTCCGCCTACATGGAGCAGCGCAACGGGCGAGACATTCGC
ATCAACC

consensusID : consensus_4184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [ATCCCGAGGTTTCAGATCCGTTCAGGTCCGCTCAGGTCGGATCTCGTTCGCGTGCAGAAAGGTGGACTTCGGCAGCGTAACGTTCGGGCGACATATGCGCGATCGGGATAAAACCGGCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGGCGAAAGCCTGAACTGAACTGAAGCAAATCCGGCTAAATGGAGCAGGCAACGGGCGAGACATTCTGCATCAACCAGGGCATTGTGTGATTACAAAAAGCCTGTCCCTATCCAACAGCTTCGTGCAGCTGTTAACTGGTGCCTGCTGCGATAAGAATTGCACCTGCTGCGTGCGTGCTGTGGTCTGCTCCATCTGCCGTGGNGCCTGCTTTTGCATTTGNGTCCNGATCCCACTACCACCCGGCTGTGCTGTCGAGTCTCCGTTTCCGAGGGATTAGGACGCACGGAGG]

[+] EMBL AL931634             [ATCCCGAGGTTTCAGATCCGTTCAGGTCCGCTCAGGTCGGATCTCGTTCGCGTGCAGAAAGGTGGACTTCGGCAGCGTAACGTTCGGGCGACATATGCGCGATCGGGATAAAACCGGCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGGCGAAAGCCTGAACTGAACTGAAGCAAATCCGGCTAAATGGAGCAGGCAACGGGCGAGACATTCTGCATCAACCAGGGCATTGTGTGATTACAAAAAGCCTGTCCCTATCCAACAGCTTCGTGCAGCTGTTAACTGGTGCCTGCTGCGATAAGAATTGCACCTGCTGCGTGCGTGCTGTGGTCTGCTCCATCTGCCGTGGNGCCTGCTTTTGCATTTGNGTCCNGATCCCACTACCACCCGGCTGTGCTGTCGAGTCTCCGTTTCCGAGGGATTAGGACGCACGGAGG]




>consensus_4184#1
ATCCCGAGGTTTCAGATCCGTTCAGGTCCGCTCAGGTCGGATCTCGTTCGCGTGCAGAAA
GGTGGACTTCGGCAGCGTAACGTTCGGGCGACATATGCGCGATCGGGATAAAACCGGCCT
CCGGGACGCAACGCACAGGAGAGCAATCGTGGGCGAAAGCCTGAACTGAACTGAAGCAAA
TCCGGCTAAATGGAGCAGGCAACGGGCGAGACATTCTGCATCAACCAGGGCATTGTGTGA
TTACAAAAAGCCTGTCCCTATCCAACAGCTTCGTGCAGCTGTTAACTGGTGCCTGCTGCG
ATAAGAATTGCACCTGCTGCGTGCGTGCTGTGGTCTGCTCCATCTGCCGTGGNGCCTGCT
TTTGCATTTGNGTCCNGATCCCACTACCACCCGGCTGTGCTGTCGAGTCTCCGTTTCCGA
GGGATTAGGACGCACGGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4184#0      CCGCGCGGGTTCCGCGAGCCGAGCCGGTCGCCCTCGCCGTCGGCCGAGCGGCTGCAGGGC 60
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      GGCCGGATTGCGGCGGACGAGGAGATTGACGATCTGGGCGGCAAGACGGAGCATGAGATT 120
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      GCGGAAATGATTGCTGAGCGGGAGGCGAAAGCGCGGGCCACGATACTGGAGATCGTGGGC 180
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      GACATCCCGGACGCGGACATTGCGCCGCCGGAGAACGTGCTGTTCGTGTGCAAGCTGAAC 240
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      CCGGTCACGACGGACGACGATCTGCAGATAATCTTCAGCCGGTTCGGCAAGATCGTCGGG 300
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      TGCGAGGTGATACGGGACAAGCTGACCGGCGACTCGCTGCAGTACGCGTTCATCGAGTTC 360
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      GAGAACCAAAAGTCGTGCGAGGACGCTTACTTTAAGATGGACAATGTGCTGATCGACGAT 420
consensus_4184#1      -----------ATCCCGAGGTTTCAGATCCGTTCAGGTCCGCTCAGGTCGGATCT-CGTT 48
                                  **  * *    *   * * ** ** *   *   *  * ****  ** *

consensus_4184#0      CGC-CGCATACACGTCGACTTTTCGCAGTCCGTGTCGAAGATCAAGTGGCGCG---GCAA 476
consensus_4184#1      CGCGTGCAGAAAGGTGGACTTC-----GGCAGCGT-AACGTTCGGGCGACATATGCGCGA 102
                      ***  *** * * ** *****      * * * **  * * **  * * *      ** *

consensus_4184#0      GGGGCGGGGAATCGAGTTCAAGGACGGGGCCGATAAGCGGTCGTTCAAGGATTACGATCG 536
consensus_4184#1      TCGGGATAAAACCGGCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGG---CGAAAG 159
                        **     ** **   **  *****   *  * * * *  *  **  **    ***  *

consensus_4184#0      TAAGAAGCAGCAGCAGCAGCAAACGAATCGTAACGGAGGCGGATCCAACAAGCGGTCGAA 596
consensus_4184#1      CCTGAACTG--AACTGAAGCAAATCCGGCTAAATGGAGCAGG---CAACGGGCGA---GA 211
                         ***     * * * ******     *  ** ****  **   ****  ***     *

consensus_4184#0      TGCTTCGCCGAAAAAGGAACGTGAGCAGGAGCAGGAACAGAAGGGGCGCTCCCGGTCCGA 656
consensus_4184#1      CATTCTGCATCAACCAGGGCATT-----GTGTGATTACAAAAAGCCTG-TCCCTATCCAA 265
                         *  **   **   *  * *      * *     *** ** *   * ****  *** *

consensus_4184#0      TTCAGGATCTCGTTCCCGATCAC-GTTCTCGATCGCGTTCCAAATCGCGCTCCAAATCGC 715
consensus_4184#1      --CAGCTTCGTGCAGCTGTTAACTGGTGCCTGCTGCGATAAGAATTGCAC-CTGCTGCGT 322
                        ***  **  *   * * * ** * *  *    *** *   *** ** * *     ** 

consensus_4184#0      GTTCCCAATCGCGTTCCAGATCTCGTTCTAGGTCTCGTTCCAGATCCCGCTCCAGGTCCG 775
consensus_4184#1      GCGTGCTGTGGTCTGCTCCATCTGCCGTGGNGCCTGCTTTTGCATTTGNGTCCNGATCCC 382
                      *    *  * *  * *   ****        * **  **    **     *** * *** 

consensus_4184#0      GGTCTCGTTCGCGTGCCAGAAAGGTGGACCGTCGTCAGCGTAGCCGTTCGCGCGACCATA 835
consensus_4184#1      ACTACCACCCGGCTGTGCTGTCGAGTCTCCGTTTCCGAGGGATTAGGACGCACGGAGG-- 440
                        *  *   **  **       *     ****   *   * *   *  *** **      

consensus_4184#0      TGCGCGATCGGGATAGAAACCGCCCTCCGGGACGCAACGCACAGGAGAGCAATCGTGGCC 895
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      GAAAGCCGAACCTGACCGAACGCAACTCCGCCTACATGGAGCAGCGCAACGGGCGAGACA 955
consensus_4184#1      ------------------------------------------------------------
                                                                                  

consensus_4184#0      TTCGCATCAACC 967
consensus_4184#1      ------------