|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1154 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCTCGCTGATGGTTTGGTTTGAGACGCGCAAGTTTGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGACCAGTGTAAAACTGGGTCGTTAAAAAGTGTCTAACAAAAGCAGGGAAAATATTAAGCAGCACCGTTTTATTGCGTGCAATCGAGAATAAACAATTGCAGCTTTGCTTCTCGAGTTCCCTTTGGTGGAAAGCGTTGCGGAAAATGAGTGGAACTGTTCGAGTATCGTTCTACTGCCAGAAGTTGCAGCTGTGGTGCAACGAGCCGATCCTGAGTCCGGTCAATCGTTAATTGTGAATCGTCTCGACAGGGAGACCTAGTGCAAATAACGGACACTTTTGTGAGCTGGGAATTGATTGGCATATAGAAACTGTTGCCCAAAATCAACCATTTGAACCATTCCCAAGACTTTCAGTGGAACAAAGGTACTGTGGTTGAGGCTAGTAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCCTGCGGCAACTACTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTCGTCGGACGAGAGTGGACCGGCACGGAGCGAATCGCTGACGGACGAGGAGCTTGCCCAGGCAACTGTTTCCGCCTCCGATTGTGACACCGATCATGACCTTCATCAGACACCTCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCATCAAGTACAACATCAGCAACCCTCCCCGAACCGATCTCACCTGCAGCAGCAGCACATGCAACAGCAGCAGCAGCAGCAGCAGCATGGACAGCATCAGCACGCGCACCAGCACCACCCGTCGGACGGTCGGGACCGGTCGAATCCATGGGCGCAGCAGCTGCAAAACCACATCAGCACCGGCACCAGCGCAAACCGTGACGGGGCCGGACAATTCGCCCGGCCCGTCGCCCGGCCGATCGAGCGGCAACAATTGGCCCTTCCCCAACTACCAGCGGCTGTACAACGAAAACTCGTACAGCATTGCAATTGCGGCGGCGGCAGCGGCGGCCAGCAGTCAGGCGCAGCAACACAACGCGACCCAGCAGCAGCTGCAGCAGCAGCAAAACCAACAAGCTCAG]
[+] EMBL BM578941 [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCGCTGATGGTTTGGTTTGAGACGCGCAAGTTTGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGACCAGTGTAAAACTGGGTCGTTAAAAAGTGTCTAACAAAAGCAGGGAAAATATTAAGCAGCACCGTTTTATTGCGTGCAATCGAGAATAAACAATTGCAGCTTTGCTTCTCGAGTTCCCTTTGGTGGAAAGCGTTGCGGAAAATGAGTGGAACTGTTCGAGTATCGTTCTACTGCCAGAAGTTGCAGCTGTGGTGCAACGAGCCGATCCTGAGTCCGGTCAATCGTTAATTGTGAATCGTCTCGACAGGGAGACCTAGTGCAAATAACGGACACTTTTGTGAGCTGGGAATTGATTGGCATATAGAAACTGTTGCCCAAAATCAACCATTTGAACCATTCCCAAGACTTTCAGTGGAACAAAGGTACTGTGGTTGAGGCTAGTAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCCTGCGGCAACTACTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTCGTCGGACGAGAGTGGACCGGCACGGAGCGAATCGCTGACGGACGAGGAGCTTGCCCAGGCAACTGTTTCCGCCTCCGATTGTGACA ]
[+] EMBL BM636491 [ ccgGGCTAATAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCTTGCGGAAATTACTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTCGTCGGACGAGAGTGGACCGGCACGGAGCGAATCGCTGACGGACGAGGAGCTTGCCCAGGCAACTGTTTCCGCCTCCGATTGTGACACCGATCATGACCTTCATCAGACACCTCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCATCAAGTACAACATCAGCAACCCTCCCCGAACCGATCTCACCTGCAGCAGCAGCACATGCAACAGCAGCAGCAGCAGCAGCAGCATGGACAGCATCAGCACGCGCACCAGCACCACCCGTCGGACGGTCGGGACCGGTCGAATCCATGGGCGCAGCAGCTGCAAAACCACATCAGCACCGGCACCAGCGCAAACCGTGACGGGGCCGGACAATTCGCCCGGCCCGTCGCCCGGCCGATCGAGCGGCAACAATTGGCCCTTCCCCAACTACCAGCGGCTGTACAACGAAAACTCGTACAGCATTGCAATTGCGGCGGCGGCAGCGGCGGCCAGCAGTCAGGCGCAGCAACACAACGCGACCCAGCAGCAGCTGCAGCAGCAGCAAAACCAACAAGCTCAG]
consensusID : consensus_4190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[CCGCGGAAATATGATCGGGTTTAGTTAATCGAGTGGTTATGATCTATTTGTGGAGTGAACCGTTTTAGGCTTAGCAAAGAGAACGAGGGATCAAAAAAGAGAAGCTTTTCTATTTTGTTTGTTTTTGATGCAAATTGAAACGAAAATTCTTGGGGGTTTTGTGTATTTTTTTCAATTAGCTAACTTAAGTTGGAGTTCATTTTTTTGGTTTCAGTTATTATTTAGAATAGGGGATACATCAGGCACAGACTATCGTCTGTTGTGTTTTTTTTCGTTTTTTCTGGCTTTTCTCCATATACATTTGCAGCATTTGAGTATAGCGAGTCCGTGCGTATCAAATTGTTCCGGAAAGTCCGAGAAATAAACAAATAATTATGAAAAACCTTCCACAAAAACAAAATATTTATTGTGCACTATTATAATATCTCCAATAGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGGCCAGTGTGACACTGGGTCGTTAACAAGTGTGTAACCA]
[+] EMBL BM623759 [CCGCGGAAATATGATCGGGTTTAGTTAATCGAGTGGTTATGATCTATTTGTGGAGTGAACCGTTTTAGGCTTAGCAAAGAGAACGAGGGATCAAAAAAGAGAAGCTTTTCTATTTTGTTTGTTTTTGATGCAAATTGAAACGAAAATTCTTGGGGGTTTTGTGTATTTTTTTCAATTAGCTAACTTAAGTTGGAGTTCATTTTTTTGGTTTCAGTTATTATTTAGAATAGGGGATACATCAGGCACAGACTATCGTCTGTTGTGTTTTTTTTCGTTTTTTCTGGCTTTTCTCCATATACATTTGCAGCATTTGAGTATAGCGAGTCCGTGCGTATCAAATTGTTCCGGAAAGTCCGAGAAATAAACAAATAATTATGAAAAACCTTCCACAAAAACAAAATATTTATTGTGCACTATTATAATATCTCCAATAGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGGCCAGTGTGACACTGGGTCGTTAACAAGTGTGTAACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4190#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCTCGCTGATGGTTTGGTTTGAGACGCGCAAGT 60
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 TTGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGACCAGTGTAAAACTGGG 120
consensus_4190#1 ------------------------CCGCGGAAATATGATCGGGTTTAGT---TAATCGAG 33
*** * * * *** ** * *
consensus_4190#0 TCGTTAAAAAGTGTCTAACAAAAGCAGGGAAAATATTAAGCAGCACCGTTTTATTGCGTG 180
consensus_4190#1 TGGTTATGA----TCTATTTGTGGAGTGAACCGTTTTAGGC--------TTAGCAAAGAG 81
* **** * **** * * * * *** ** ** * *
consensus_4190#0 CAATCGAGAATAAACAATTGCAGCTTTGCTTCTCGAGTTCCCTTTGGTGGAAAGCGTTGC 240
consensus_4190#1 AACGAGGGATCAAAAAAGAGAAGCTTTTCTATTTTGTTTGTTTTTGATGCAAATTGAAAC 141
* * ** *** ** * ****** ** * ** **** ** *** * *
consensus_4190#0 GGAAAATGAGTGGAACTGTTCGAGTATCGTTCTACTGCCAGAAGTTGCAGCTGTGGTGCA 300
consensus_4190#1 GAAAATTCTTGGGGGTTTTGTGTATTTTTTTCAATTAGC--TAACTTAAGTTGGAGTTCA 199
* *** * ** * * * * * *** * * * * * ** ** ** **
consensus_4190#0 ACGAGCCGATCCTGAGTCCGGTCAATCGTTA--ATTGTGAATCGTCTCGACAGGGAGACC 358
consensus_4190#1 ------TTTTTTTGGTTTCAGTTATTATTTAGAATAGGGGATACATCAGGCACAGA---C 250
* ** * * ** * * *** ** * * ** * ** ** *
consensus_4190#0 TAGTGCAAATAACGGACACTTTTGTGAGCTGGGAATTGATTGGCATATAGAAAC-TGTTG 417
consensus_4190#1 TATCGTCTGTTGTGTTTTTTTTCGTTTTTTCTGGCTTTTCTC-CATATACATTTGCAGCA 309
** * * * *** ** * * ** * ****** *
consensus_4190#0 CCCAAAATCAACCATTTGAACCATTCCCAAGACTTTCAGTGGAACAAAGGTACTGTGGTT 477
consensus_4190#1 TTTGAGTATAGCGAGTCCGTGCGTATCAAATTGTTCCGGAAAGTCCGAGAAAT------- 362
* * * * * * * * ** ** * * * ** *
consensus_4190#0 GAGGCTAGTAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCCTGCGGCAACTA 537
consensus_4190#1 -AAACAAATAATTATGAA--AAACCTTCCACAAAAACA-AAATATTTATTGTGC--ACTA 416
* * * ** ** * ** * ** *** * * * * ** * ****
consensus_4190#0 CTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTC 597
consensus_4190#1 TTATAA------------TATCTCCAATAGTGATGCTTGTGAAACGTAC-AGTGAGTGAA 463
** ** * * * * * ** ** * * *** * * **
consensus_4190#0 GTCGGACGAGAGTGGACCGGCACGGAGC-GAATCGCTGACGGACGAGGAGCTTGCCCAGG 656
consensus_4190#1 GTGAAACTAAGG----CCAGTGTGACACTGGGTCGTTAACAAGTGTGTAACCA------- 512
** ** * * ** * * * * *** * ** * * * *
consensus_4190#0 CAACTGTTTCCGCCTCCGATTGTGACACCGATCATGACCTTCATCAGACACCTCAGCAGC 716
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 AGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCATCAAGTACAACATCAGCAAC 776
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 CCTCCCCGAACCGATCTCACCTGCAGCAGCAGCACATGCAACAGCAGCAGCAGCAGCAGC 836
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 AGCATGGACAGCATCAGCACGCGCACCAGCACCACCCGTCGGACGGTCGGGACCGGTCGA 896
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 ATCCATGGGCGCAGCAGCTGCAAAACCACATCAGCACCGGCACCAGCGCAAACCGTGACG 956
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 GGGCCGGACAATTCGCCCGGCCCGTCGCCCGGCCGATCGAGCGGCAACAATTGGCCCTTC 1016
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 CCCAACTACCAGCGGCTGTACAACGAAAACTCGTACAGCATTGCAATTGCGGCGGCGGCA 1076
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 GCGGCGGCCAGCAGTCAGGCGCAGCAACACAACGCGACCCAGCAGCAGCTGCAGCAGCAG 1136
consensus_4190#1 ------------------------------------------------------------
consensus_4190#0 CAAAACCAACAAGCTCAG 1154
consensus_4190#1 ------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||