cluster # 4195

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Anopheles gambiae
cluster # 4195 cluster # 4195 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4195#0 length = 589 sequences # 2

consensus_4195#1 length = 189 sequences # 1

consensusID : consensus_4195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence

                              [CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTCAATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCGCTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCACGATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGCCTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAGATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTCTTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTGCATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGAAAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC]

[+] EMBL BM587064             [CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTCAATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCGCTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCACGATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGCCTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAGATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTCTTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTGCATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGAAAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC]
[+] EMBL BM653831             [                                                                                                                                                                                                                                                                                                                                                                                                                          cCGATCG TTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTGCATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGAAAAGGGGGAAAAAAGCTCACCATGTACGGACGTCAGGAATCGCAAGGG ]




>consensus_4195#0
CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTC
AATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCG
CTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCAC
GATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGC
CTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAG
ATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTC
TTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTT
TGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTG
CATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGA
AAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC

consensusID : consensus_4195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [CCGCCCACGCGTCCGGATCGTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTAGTGCATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTATTACACGCCCAGTTTAGTACGAAAAGCCGGAAAAAGCTCACCATGTACGGACGTCAGGAATCGCAAGGG]

[+] EMBL BM646741             [CCGCCCACGCGTCCGGATCGTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTAGTGCATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTATTACACGCCCAGTTTAGTACGAAAAGCCGGAAAAAGCTCACCATGTACGGACGTCAGGAATCGCAAGGG]




>consensus_4195#1
CCGCCCACGCGTCCGGATCGTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGC
TGTGGTGATCGTGTGTTTAGTGCATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTA
TTACACGCCCAGTTTAGTACGAAAAGCCGGAAAAAGCTCACCATGTACGGACGTCAGGAA
TCGCAAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4195#0      CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTC 60
consensus_4195#1      ------------------------------------------------------------
                                                                                  

consensus_4195#0      AATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCG 120
consensus_4195#1      ------------------------------------------------------------
                                                                                  

consensus_4195#0      CTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCAC 180
consensus_4195#1      ------------------------------------------------------------
                                                                                  

consensus_4195#0      GATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGC 240
consensus_4195#1      ------------------------------------------------------------
                                                                                  

consensus_4195#0      CTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAG 300
consensus_4195#1      ------------------------------------------------------------
                                                                                  

consensus_4195#0      ATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTC 360
consensus_4195#1      ------------------------------------------------------------
                                                                                  

consensus_4195#0      TTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTT 420
consensus_4195#1      ------------------------------CCGCCCACGCGTCCGG-------ATCGTTT 23
                                                    ***  ***    ****       *******

consensus_4195#0      TGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTG 480
consensus_4195#1      -GGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTAGTG 82
                       ******************************************************* ***

consensus_4195#0      CATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGA 540
consensus_4195#1      CATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTATTACACGCCCAGTTTAGTACGA 142
                      ****************************** ** ****  ********************

consensus_4195#0      AAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC 589
consensus_4195#1      AAAGCCGGAAAAA-GCTCACCATGTACGGACGTCAGGAATCGCAAGGG- 189
                      ****  ******* ****** ***************************