cluster # 4214

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Anopheles gambiae
cluster # 4214 cluster # 4214 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4214#0 length = 696 sequences # 2

consensus_4214#1 length = 575 sequences # 1

consensusID : consensus_4214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence

                              [CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCAATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAAAAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGTAACGTCGTCGTGTTGGGTTTTTTTCCTTCTTCGTTTGGTGGCTTCGTGTGTCCAGGTGCGAATCAGTTATCCGGTCGATTGAATACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTGGTGTGAAATGTTCGGTGCGCAGGAAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAGCGAGTCTGCGTGTGCAAAAAAAAATGGNCAAAACCG]

[+] EMBL BX623983             [CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCAATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAAAAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCT                                                                                                                                                                                                                                 ]
[+] EMBL BX626320             [        AGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCAATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAAAAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGTAACGTCGTCGTGTTGGGTTTTTTTCCTTCTTCGTTTGGTGGCTTCGTGTGTCCAGGTGCGAATCAGTTATCCGGTCGATTGAATACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTGGTGTGAAATGTTCGGTGCGCAGGAAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAGCGAGTCTGCGTGTGCAAAAAAAAATGGNCAAAACCG]




>consensus_4214#0
CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACAT
CGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCG
GAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACA
AGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGC
TGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCA
ATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACAC
AGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAA
AAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGT
AACGTCGTCGTGTTGGGTTTTTTTCCTTCTTCGTTTGGTGGCTTCGTGTGTCCAGGTGCG
AATCAGTTATCCGGTCGATTGAATACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTG
GTGTGAAATGTTCGGTGCGCAGGAAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAG
CGAGTCTGCGTGTGCAAAAAAAAATGGNCAAAACCG

consensusID : consensus_4214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CCAAGAATTGCCGTNCATCAACGTTGCAGATCGGGCGGAAAAAAAAACACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGATCACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGCCTGGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAAACTTGCCTCGACGGCCTTATCGGACTTAGCACTANCCCACTCACGCCTGCTACTCCTCACTTTAANACACCCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGCCTGCTATCTCGGTAACGGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT]

[+] EMBL AL930491             [CCAAGAATTGCCGTNCATCAACGTTGCAGATCGGGCGGAAAAAAAAACACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGATCACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGCCTGGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAAACTTGCCTCGACGGCCTTATCGGACTTAGCACTANCCCACTCACGCCTGCTACTCCTCACTTTAANACACCCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGCCTGCTATCTCGGTAACGGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT]




>consensus_4214#1
CCAAGAATTGCCGTNCATCAACGTTGCAGATCGGGCGGAAAAAAAAACACGGTAAGAGAC
AGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAA
CATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGGTT
GCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGCGG
GTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGATC
ACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGCCT
GGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAAAC
TTGCCTCGACGGCCTTATCGGACTTAGCACTANCCCACTCACGCCTGCTACTCCTCACTT
TAANACACCCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGCCTGCTATCTCGGTAAC
GGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4214#0      --------------------CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAG 40
consensus_4214#1      CCAAGAATTGCCGTNCATCAACGTTGCA-GATCGGGCGGAAAAAAAAAC-ACGGTAAGAG 58
                                           ******* ******************** **********

consensus_4214#0      ACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACA 100
consensus_4214#1      ACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACA 118
                      ************************************************************

consensus_4214#0      AACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAG-GG 159
consensus_4214#1      AACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGG 178
                      ********************************************************* **

consensus_4214#0      TTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCAT-CCTTAATCGGGC 218
consensus_4214#1      TTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGC 238
                      *********************************************** ************

consensus_4214#0      GGGTTCGATCCTCCCCGTGTGCTGAT-GGAGCTCGAGAGCTATGGCAGCTGGAG-GAGGA 276
consensus_4214#1      GGGTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGA 298
                      ************************** *************************** *****

consensus_4214#0      TCACGA-TGCAAGG-AGAGGTACCCAATAAA-ATGCAAA--TTTCACTCAACCACCAAGC 331
consensus_4214#1      TCACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGC 358
                      ****** ******* **************** *******  *******************

consensus_4214#0      CTGG-ACGGGGCAGACGACAGCAGCAACACAGCAGTCG-TCGTAGCAGCAGC-AATCGAA 388
consensus_4214#1      CTGGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAA 418
                      **** ********************************* ************* *******

consensus_4214#0      ACTTGC-TCGACGGC-TTATTGGA-TTAGCATAAAAAATCAGCTGTATTTATTAAACGGC 445
consensus_4214#1      ACTTGCCTCGACGGCCTTATCGGACTTAGCACTANC--CCACTCACGCCTGCTA------ 470
                      ****** ******** **** *** ******  *     **        *  **      

consensus_4214#0      CCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGTAACGTCGTCGTGTTGGGTTTTTTTC 505
consensus_4214#1      CTCCTCACTTTAANACAC------CCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGC 524
                      * *   * *   * *  *      * **  * ** * *            **** *** *

consensus_4214#0      CTTCTTCGTTTGGTGGC--TTCGTGTGTCCAGGTGCGAATCAGTTATCCGGTCGATTGAA 563
consensus_4214#1      CTGCTAT-CTCGGTAACGGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT-------- 575
                      ** **    * ***  *   ***   *     * *    **  *  ***  *        

consensus_4214#0      TACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTGGTGTGAAATGTTCGGTGCGCAGG 623
consensus_4214#1      ------------------------------------------------------------
                                                                                  

consensus_4214#0      AAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAGCGAGTCTGCGTGTGCAAAAAAAA 683
consensus_4214#1      ------------------------------------------------------------
                                                                                  

consensus_4214#0      ATGGNCAAAACCG 696
consensus_4214#1      -------------