cluster # 4217

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Anopheles gambiae
cluster # 4217 cluster # 4217 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4217#0 length = 918 sequences # 2

consensus_4217#1 length = 501 sequences # 1

consensusID : consensus_4217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 918
fasta sequence

                              [GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATCGTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCATTAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGTTGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAGGGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCA-CATCAAGTTGTAGGTCACCGGCACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGAGAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTCGCTG-TTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCAGAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGTGACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCGGACAGAGTGCGGAATTTGTT]

[+] EMBL CNS099BZ             [GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATCGTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCATTAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGTTGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAGGGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCA CATCAAGTTGTAGGTCACCGGCACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGAGAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTCGCTG TTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCAGAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGTGACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCA                                                             ]
[-] EMBL CNS099C0             [                                                                                                                                                                                               AAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAGGGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCAGCATCAAGTTGTAGGTCACCGGCACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGAGAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTCGCTGTTTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCAGAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGTGACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCGGACAGAGTGCGGAATTTGTT]




>consensus_4217#0
GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATC
GTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCAT
TAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGT
TGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAG
GGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCACATCAAGTTGTAGGTCACCGG
CACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGA
GAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTC
GCTGTTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCA
GAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGT
GACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCT
TATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAA
GATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAG
CAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGAT
TGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGA
GCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCGGA
CAGAGTGCGGAATTTGTT

consensusID : consensus_4217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GGCAGAATCGCCACGAGGTATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGACTATATGGGCTTTATGAAGCGCACCAAATCCGGCATCATACGCAACTTCAACGTGGCCTGTTTGGATGAGTTTTTCTCGATGAAAACATGGCACTGGAGGACATTCTAACGCCTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTATACCACGGCCAATCAATCATACAGGCAGCACAGAGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACGCTGAAGGAGCTGCGCCATCGCTGGATCAAACCGACGCGCGTGCAACCGATCGACGAGATACGGGACTACTTTGGCGAGAGTGTCGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCACTGGTCGTGCCGACGGTGTTCGG]

[+] EMBL AL932503             [GGCAGAATCGCCACGAGGTATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGACTATATGGGCTTTATGAAGCGCACCAAATCCGGCATCATACGCAACTTCAACGTGGCCTGTTTGGATGAGTTTTTCTCGATGAAAACATGGCACTGGAGGACATTCTAACGCCTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTATACCACGGCCAATCAATCATACAGGCAGCACAGAGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACGCTGAAGGAGCTGCGCCATCGCTGGATCAAACCGACGCGCGTGCAACCGATCGACGAGATACGGGACTACTTTGGCGAGAGTGTCGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCACTGGTCGTGCCGACGGTGTTCGG]




>consensus_4217#1
GGCAGAATCGCCACGAGGTATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGA
GATTGCCGACTATATGGGCTTTATGAAGCGCACCAAATCCGGCATCATACGCAACTTCAA
CGTGGCCTGTTTGGATGAGTTTTTCTCGATGAAAACATGGCACTGGAGGACATTCTAACG
CCTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGAC
GAGCATCGGATACCGGGCACAAAGATCATCCTATACCACGGCCAATCAATCATACAGGCA
GCACAGAGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACGCTGAAG
GAGCTGCGCCATCGCTGGATCAAACCGACGCGCGTGCAACCGATCGACGAGATACGGGAC
TACTTTGGCGAGAGTGTCGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCACT
GGTCGTGCCGACGGTGTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4217#0      GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATC 60
consensus_4217#1      ------------------------------------------------------------
                                                                                  

consensus_4217#0      GTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCAT 120
consensus_4217#1      ------------------------------------------------------------
                                                                                  

consensus_4217#0      TAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGT 180
consensus_4217#1      ------------------------------------------------------------
                                                                                  

consensus_4217#0      TGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAG 240
consensus_4217#1      ------------------------------------------------------------
                                                                                  

consensus_4217#0      GGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCACATCAAGTTGTAGGTCACCGG 300
consensus_4217#1      ------------------------------------------------------------
                                                                                  

consensus_4217#0      CACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGA 360
consensus_4217#1      ------------------------------------------------------------
                                                                                  

consensus_4217#0      GAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTC 420
consensus_4217#1      ---------------------GGCAGAA--TCGCCACGAGGTATCATTTTCCACCTTTCC 37
                                           ** ****  * *** *  ** *       * *      *

consensus_4217#0      GCTGTTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCA 480
consensus_4217#1      GCCACGCACATGAAGCTAC----TCGAGATTGCCGACTATATGGGCTTTA-TGAAGCGCA 92
                      **       * ***  * *    ** *  *   ***  * ****     * ** ** ***

consensus_4217#0      GAACAAGCTAAATGAGTTGCGCAATCGCAAGG-GCACGGTTAGGATTAATCAACCCAAGG 539
consensus_4217#1      C--CAAATCCGGCATCATACGCAACTTCAACGTGGCCTGTTTGGATGAGTTTTTCT---- 146
                         ***           * *****   *** * *  * *** **** * *    *     

consensus_4217#0      TGACGCGACAGGACAAGGCACGTCCGCCGGACGATG-AGCAGGAACCGTTCGGTGAAAGC 598
consensus_4217#1      CGATG----AAAACATGGCAC---TGGAGGACATTCTAACGCCTGCCGATCGGC-AAATC 198
                       ** *    *  *** *****    *  ****  *  * *     *** ****  *** *

consensus_4217#0      CTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGAC 658
consensus_4217#1      ATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGC 258
                       *  *   **  * * * *    **      * * *** *     **  ****   ** *

consensus_4217#0      AAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTC 718
consensus_4217#1      ACAA----AGATCATC--CTATACCACGGC---CAATCAATCATAC---AGGCAGCACAG 306
                      *  *     * **  *   *  **  ***     ***  **  * *   *** * * *  

consensus_4217#0      AGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAG 778
consensus_4217#1      AGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACG---CTGAAGGAG 363
                      **    **    *  **** * *** *   **   ** ** ** ** *   **    ***

consensus_4217#0      ATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGAC 838
consensus_4217#1      CTGCGCCATCGCTGGATCAAACCGACGCGCGTGC---AACCGATCGACGAGATACGGGAC 420
                       *   * ****    ****     * ** ** **   ** ***** * * *      ***

consensus_4217#0      GAGCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCG 898
consensus_4217#1      TA-CTTTGGCGAGAGTGT-CGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCA 478
                       * * * **  *  * *  *    **   * *** *  *      *    **   * ** 

consensus_4217#0      GACAGAGTGCGGAATTTGTT--- 918
consensus_4217#1      CTGGTCGTGCCGACGGTGTTCGG 501
                            **** **   ****