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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence
[CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCAACAGT]
[+] EMBL BM613169 [CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCAT ]
[+] EMBL BM595719 [ ccgccaagtCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCAACAGT]
consensusID : consensus_4219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACGGACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT]
[+] EMBL BM649040 [CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACGGACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4219#0 CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAG 60
consensus_4219#1 ------------------------------------------------------------
consensus_4219#0 AAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTG 120
consensus_4219#1 ------------------------------------------------------------
consensus_4219#0 AACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGT 180
consensus_4219#1 --------------------------------CCGCCCACGCGTCCG-CGCAGCTCGAGT 27
* ** ** * ************
consensus_4219#0 GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC 240
consensus_4219#1 GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC 87
************************************************************
consensus_4219#0 GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT 300
consensus_4219#1 GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT 147
************************************************************
consensus_4219#0 CCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC 360
consensus_4219#1 CCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC 207
*** ********************************************************
consensus_4219#0 CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC 420
consensus_4219#1 CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC 267
************************************************************
consensus_4219#0 CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC 480
consensus_4219#1 CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC 327
************************************************************
consensus_4219#0 CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA 540
consensus_4219#1 CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA 387
************************************************************
consensus_4219#0 TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC 600
consensus_4219#1 TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC 447
************************************************************
consensus_4219#0 AATCTGGGCTTTGGACCGGCACCGCAACAGT----------------------------- 631
consensus_4219#1 AATCTGGGCTTTGGACCGGCACCGCA-CAGTACGGACGTGTTGGCCAAAATACCCAAACG 506
************************** ****
consensus_4219#0 --------------------------------------------
consensus_4219#1 GTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT 550
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||