These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATAGCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAAAAA] [+] EMBL AL932596 [AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATAGCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAAAAA] consensusID : consensus_4226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATCCCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGAAATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCGATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC] [+] EMBL BX624686 [CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATCCCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGAAATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCGATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC] consensusID : consensus_4226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAACGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGCACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAAGGTTGGTCTGGT] [+] EMBL BM603028 [CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAACGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGCACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAAGGTTGGTCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4226#0 AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATA 60 consensus_4226#1 ------------------------------------------------------------ consensus_4226#2 ------------------------------------------------------------ consensus_4226#0 GCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATC 120 consensus_4226#1 ---------------CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATC 45 consensus_4226#2 -----------------------------CCGGCCGCTCGCGGCGTGCGGCAC--AGTTT 29 *** * ** * ***** ** * * consensus_4226#0 GCTCGTA-TAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACT 179 consensus_4226#1 GCTCGT--TAATAGATCCCCCATACAGTATT-CGTAGCTGGGTGTGCTGTTTTCTATACT 102 consensus_4226#2 GTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTT 89 * * * **** * ** * * * * * * * * *** * * consensus_4226#0 CACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCA 239 consensus_4226#1 CACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCA 162 consensus_4226#2 TCCTTCT-----CCCTGGAGTGATCGCCTGCAA---GAACGCCAACCATGCAAGAAAGGA 141 ** * ** * * ** * *** *** * *** * ** * consensus_4226#0 CGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGA 299 consensus_4226#1 CGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGA 222 consensus_4226#2 TAGAATGCTAAA----ATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGC 197 * * ** * **** * * ** ** * * ***** * ** consensus_4226#0 CTTCT---TGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACC 356 consensus_4226#1 CTTCT---TGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGG-CGTCTTTTGCAAAACC 278 consensus_4226#2 CCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTT 257 * *** * * ** * **** * ** ** * *** ** consensus_4226#0 ATTTAATTAAAATT--AACTTCACGA---TTATTAGGCCGCCTGGTGG---AGGGCGACG 408 consensus_4226#1 ATTTAATTAAAATT--AACTTCACGA---TTATTAGGCCGCCTGGTGG---AGGGCGACG 330 consensus_4226#2 AAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTT 317 * * * **** *** * ** ******* * *** * * ** * consensus_4226#0 GATGGGGTGAAGAAC-TGCCCAG---CTTAGCGCAGTACCTTTCACACATACGCACCGCG 464 consensus_4226#1 GATGGGGTGAAGAAC-TGCCCAG---CTTAGCGCAGTACCTTTCACACATACGCACCGCG 386 consensus_4226#2 AGTTAGATGTTAATTATGACTAGATACTTGGC-CGGTACGTGGCACAAAAAAGCGCCGTA 376 * * ** * ** * ** *** ** * **** * **** * * ** *** consensus_4226#0 TCGTT-GTTCCTGTTTGTTGGCATTGCCGC-AGCACGGGACATCCAGCCAGGGCTTTCTG 522 consensus_4226#1 TCGTT-GTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTT-TG 444 consensus_4226#2 AGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAA 436 ** * * * *** ** * * * *** * ** * ** * consensus_4226#0 CACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACG 582 consensus_4226#1 CAC--GATGTATACTCCTCGC-ACTGCACAGA---CCGCTGAA-ATCGA------TCGGT 491 consensus_4226#2 GGTTGGTCTGGT------------------------------------------------ 448 * consensus_4226#0 AGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGG 642 consensus_4226#1 AGAGAAATTAATTAAAC-TTGTTT-TTCAGAA-GCGAA---CGTGGGGTATT-------G 538 consensus_4226#2 ------------------------------------------------------------ consensus_4226#0 GGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATG 702 consensus_4226#1 CGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTG--CTTCAAAC-TG 595 consensus_4226#2 ------------------------------------------------------------ consensus_4226#0 AGCCGAACTACCGGCCAAAAA--------------------------------------- 723 consensus_4226#1 ACGCGA--TACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAA 653 consensus_4226#2 ------------------------------------------------------------ consensus_4226#0 ------------------------------------------------------------ consensus_4226#1 TCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTT 713 consensus_4226#2 ------------------------------------------------------------ consensus_4226#0 --- consensus_4226#1 CAC 716 consensus_4226#2 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||