cluster # 4227

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Anopheles gambiae
cluster # 4227 cluster # 4227 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4227#0 length = 893 sequences # 2

consensus_4227#1 length = 274 sequences # 1

consensusID : consensus_4227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 893
fasta sequence

                              [CCGATTTATACAGAGAACGTTCGCCAAGAGCGTGTTGAATTTATCGTATATAATTGTACTGTATATGATGGTGCGCTCTCTATTCCCTAGTTTAAGAATAATGTTTGTTTTTGGTTCCTTCATTGTTAAGTTATAACGTTTCCTTTCGTCGTGCCTTGTTGTGTCGCCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAGGTGTGGTGGAAAAGGTGACCAAAGGAAAGGTGCTCTATGACTGGCTCATTTAACTAACCGAAACCACTCTGCAGGAAAACGTTTAGCGATACACTTACCGTTTTATAATATATTGCTGCAGTATGCAGTACATCACACCCACACGTACCAAGGACTTGGCAACCACTCACGCCCACCCTGATTCTATCACCTAAGTAATATACAGCTCGATTGTGGTTGCGTTTGCTTTTCAAAGTGATATCGATGGGTTATGGAGAGAAGGGCGCGTGGGCTCCATAACTGAATGCCACAAAGCCACACCGAAGAAGCTGTGACGTGTCCGCCAGTGTTGTTGTTTCAAAAGCTTTTTTCACCATTTAAACTGGACAGATGTGTTAAACAGCCGCCATTCCGATCATAACACACGCGCGTAAGCATCATGTTCCATTAGTGCTGCTCTTTGGTGTCCTACCTTCATTTATCATACACATAGGCTGGCTACTGCTACTGCTACCGGCAGGTATCCGATTTCTCCGAGGAGAAATTCGGTATCGGTTGCGGTGGATCTGATTCTGAGGTTCATTCTGAGTATATATAGACATGATTTTGCAACAACACGCTTACAACCAACACTGTTTATGATTTCCCGTTTTTGAGTTGTTCCGTTTCTGCACGACAAATGTATAATTCATGTTGCGATTTGACCCAA]

[+] EMBL BM594916             [CCGATTTATACAGAGAACGTTCGCCAAGAGCGTGTTGAATTTATCGTATATAATTGTACTGTATATGATGGTGCGCTCTCTATTCCCTAGTTTAAGAATAATGTTTGTTTTTGGTTCCTTCATTGTTAAGTTATAACGTTTCCTTTCGTCGTGCCTTGTTGTGTCGCCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAGGTGTGGTGGAAAAGGTGACCAAAGGAAAGGTGCTCTATGACTGGCTCATTTAACTAACCGAAACCACTCTGCAGGAAAACGTTTAGCGATACACTTACCGTTTTATAATATATTGCTGCAGTATGCAGTACATCACACCCACACGTACCAAGGACTTGGCAACCACTCACGCCCACCCTGATTCTATCACCTAAGTAATATACAGCTCGATTGTGGTTGCGTTTGCTTTTCAAAGTGATATCGATGGGTTATGGAGAGAAGGGCGCGTGGGCTCCATAACTGAATGCCACAAAGCCACACCGAAGAAGCTGTGACGTGTCCGCCAGTGTTGTTGTTTCAAAAGCTTTTTTCACCATTTAAACTGGACAGATGTGTTAAACAGCCGCCATTCCGATCATAACACACGCGCGTAAGCATCATGTTCCATTAGTGCTGCTCTTTGGTGTCCTACC                                                                                                                                                                                                                                            ]
[+] EMBL BX609567             [                                                                                                                                                                                                                                                                                                                              TGCTGCAGTATGCAGTACATCACACCCACACGTACCAAGGACTTGGCAACCACTCACGCCCACCCTGATTCTATCACCTAAGTAATATACAGCTCGATTGTGGTTGCGTTTGCTTTTCAAAGTGATATCGATGGGTTATGGAGAGAAGGGCGCGTGGGCTCCATAACTGAATGCCACAAAGCCACACCGAAGAAGCTGTGACGTGTCCGCCAGTGTCGTTGTTTTAAAAGCTTTTTTCACCATTTAAACTGGACAGATGTGTTAAACAGCCGCCATTCCGATCATAACACA  CGCGTAAGCATAATGTTCCATTAGTGCTGCTCTTTGGTGTCCTACCTTCATTTATCATACACATAGGCTGGCTACTGCTACTGCTACCGGCAGGTATCCGATTTCTCCGAGGAGAAATTCGGTATCGGTTGCGGTGGATCTGATTCTGAGGTTCATTCTGAGTATATATAGACATGATTTTGCAACAACACGCTTACAACCAACACTGTTTATGATTTCCCGTTTTTGAGTTGTTCCGTTTCTGCACGACAAATGTATAATTCATGTTGCGATTTGACCCAA]




>consensus_4227#0
CCGATTTATACAGAGAACGTTCGCCAAGAGCGTGTTGAATTTATCGTATATAATTGTACT
GTATATGATGGTGCGCTCTCTATTCCCTAGTTTAAGAATAATGTTTGTTTTTGGTTCCTT
CATTGTTAAGTTATAACGTTTCCTTTCGTCGTGCCTTGTTGTGTCGCCGTGTGCCGCCGT
CGCTCCATTCCGACTTGCGCGCAAGGTGTGGTGGAAAAGGTGACCAAAGGAAAGGTGCTC
TATGACTGGCTCATTTAACTAACCGAAACCACTCTGCAGGAAAACGTTTAGCGATACACT
TACCGTTTTATAATATATTGCTGCAGTATGCAGTACATCACACCCACACGTACCAAGGAC
TTGGCAACCACTCACGCCCACCCTGATTCTATCACCTAAGTAATATACAGCTCGATTGTG
GTTGCGTTTGCTTTTCAAAGTGATATCGATGGGTTATGGAGAGAAGGGCGCGTGGGCTCC
ATAACTGAATGCCACAAAGCCACACCGAAGAAGCTGTGACGTGTCCGCCAGTGTTGTTGT
TTCAAAAGCTTTTTTCACCATTTAAACTGGACAGATGTGTTAAACAGCCGCCATTCCGAT
CATAACACACGCGCGTAAGCATCATGTTCCATTAGTGCTGCTCTTTGGTGTCCTACCTTC
ATTTATCATACACATAGGCTGGCTACTGCTACTGCTACCGGCAGGTATCCGATTTCTCCG
AGGAGAAATTCGGTATCGGTTGCGGTGGATCTGATTCTGAGGTTCATTCTGAGTATATAT
AGACATGATTTTGCAACAACACGCTTACAACCAACACTGTTTATGATTTCCCGTTTTTGA
GTTGTTCCGTTTCTGCACGACAAATGTATAATTCATGTTGCGATTTGACCCAA

consensusID : consensus_4227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [AGAATCGNCACGAGGTGTACTGTATATGATGGTGCGCTGCCCTGATTCCCTAGTTTAAGAAGTAAGTGTTTAGTTTATGATGGTTCCTTAACATTGTNTGAAGTTATAACGTTTCCTTTCGTACGTGCGCTTGTTGTGTCGCCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAGGGTGTGGTGGAAAAGGTGACCAAAGGAAAGGTGCTCTATGACAGGCTCATTTAACTAACCGAAAACACTCTGCAGGAAAACGTTTAGGGCATAC]

[+] EMBL BX469318             [AGAATCGNCACGAGGTGTACTGTATATGATGGTGCGCTGCCCTGATTCCCTAGTTTAAGAAGTAAGTGTTTAGTTTATGATGGTTCCTTAACATTGTNTGAAGTTATAACGTTTCCTTTCGTACGTGCGCTTGTTGTGTCGCCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAGGGTGTGGTGGAAAAGGTGACCAAAGGAAAGGTGCTCTATGACAGGCTCATTTAACTAACCGAAAACACTCTGCAGGAAAACGTTTAGGGCATAC]




>consensus_4227#1
AGAATCGNCACGAGGTGTACTGTATATGATGGTGCGCTGCCCTGATTCCCTAGTTTAAGA
AGTAAGTGTTTAGTTTATGATGGTTCCTTAACATTGTNTGAAGTTATAACGTTTCCTTTC
GTACGTGCGCTTGTTGTGTCGCCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAG
GGTGTGGTGGAAAAGGTGACCAAAGGAAAGGTGCTCTATGACAGGCTCATTTAACTAACC
GAAAACACTCTGCAGGAAAACGTTTAGGGCATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4227#0      CCGATTTATACAGAGAACGTTCGCCAAGAGCGTGTTGAATTTATCGTATATAATTGTACT 60
consensus_4227#1      ---------------------------------------AGAATCGNCACGAGGTGTACT 21
                                                                ****     *  ******

consensus_4227#0      GTATATGATGGTGCGCTCTCT--ATTCCCTAGTTTAAGAAT--AATGTTTGTTTT----T 112
consensus_4227#1      GTATATGATGGTGCGCTGCCCTGATTCCCTAGTTTAAGAAGTAAGTGTTTAGTTTATGAT 81
                      *****************  *   *****************   * *****  ***    *

consensus_4227#0      GGTTCCTT--CATTGTT--AAGTTATAACGTTTCCTTTCGT-CGTGC-CTTGTTGTGTCG 166
consensus_4227#1      GGTTCCTTAACATTGTNTGAAGTTATAACGTTTCCTTTCGTACGTGCGCTTGTTGTGTCG 141
                      ********  ******   ********************** ***** ************

consensus_4227#0      CCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAGG-TGTGGTGGAAAAGGTGACC 225
consensus_4227#1      CCGTGTGCCGCCGTCGCTCCATTCCGACTTGCGCGCAAGGGTGTGGTGGAAAAGGTGACC 201
                      **************************************** *******************

consensus_4227#0      AAAGGAAAGGTGCTCTATGACTGGCTCATTTAACTAACCGAAACCACTCTGCAGGAAAAC 285
consensus_4227#1      AAAGGAAAGGTGCTCTATGACAGGCTCATTTAACTAACCGAAAACACTCTGCAGGAAAAC 261
                      ********************* ********************* ****************

consensus_4227#0      GTTTAGCGATACACTTACCGTTTTATAATATATTGCTGCAGTATGCAGTACATCACACCC 345
consensus_4227#1      GTTTAG-GGCATAC---------------------------------------------- 274
                      ****** *  * **                                              

consensus_4227#0      ACACGTACCAAGGACTTGGCAACCACTCACGCCCACCCTGATTCTATCACCTAAGTAATA 405
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      TACAGCTCGATTGTGGTTGCGTTTGCTTTTCAAAGTGATATCGATGGGTTATGGAGAGAA 465
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      GGGCGCGTGGGCTCCATAACTGAATGCCACAAAGCCACACCGAAGAAGCTGTGACGTGTC 525
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      CGCCAGTGTTGTTGTTTCAAAAGCTTTTTTCACCATTTAAACTGGACAGATGTGTTAAAC 585
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      AGCCGCCATTCCGATCATAACACACGCGCGTAAGCATCATGTTCCATTAGTGCTGCTCTT 645
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      TGGTGTCCTACCTTCATTTATCATACACATAGGCTGGCTACTGCTACTGCTACCGGCAGG 705
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      TATCCGATTTCTCCGAGGAGAAATTCGGTATCGGTTGCGGTGGATCTGATTCTGAGGTTC 765
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      ATTCTGAGTATATATAGACATGATTTTGCAACAACACGCTTACAACCAACACTGTTTATG 825
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      ATTTCCCGTTTTTGAGTTGTTCCGTTTCTGCACGACAAATGTATAATTCATGTTGCGATT 885
consensus_4227#1      ------------------------------------------------------------
                                                                                  

consensus_4227#0      TGACCCAA 893
consensus_4227#1      --------