cluster # 4230

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Anopheles gambiae
cluster # 4230 cluster # 4230 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4230#0 length = 683 sequences # 1

consensus_4230#1 length = 676 sequences # 1
consensus_4230#2 length = 513 sequences # 1

consensusID : consensus_4230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGCCCACGCGTCCGGTGCGGGTGGTGCCGGTGTCGTGCTAGTGTCCGGGCTGGCGCACTCACAATCCGCCCATCAGATAGGGCAACCGCCGCCGCCGTCCCTCGTTCACGCGCAGCTTGCCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCAGCATTTCGCGAACGTAGCCGCCAACGCCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTGGCGGTGGCGGTAGCAGTAGCAGTGGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAG]

[+] EMBL BM597893             [CCGCCCACGCGTCCGGTGCGGGTGGTGCCGGTGTCGTGCTAGTGTCCGGGCTGGCGCACTCACAATCCGCCCATCAGATAGGGCAACCGCCGCCGCCGTCCCTCGTTCACGCGCAGCTTGCCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCAGCATTTCGCGAACGTAGCCGCCAACGCCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTGGCGGTGGCGGTAGCAGTAGCAGTGGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAG]




>consensus_4230#0
CCGCCCACGCGTCCGGTGCGGGTGGTGCCGGTGTCGTGCTAGTGTCCGGGCTGGCGCACT
CACAATCCGCCCATCAGATAGGGCAACCGCCGCCGCCGTCCCTCGTTCACGCGCAGCTTG
CCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCAGCATTTCGCGAACGTAGCCGCCAACG
CCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATG
ACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTC
TCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGC
AGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATA
CCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGC
CGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCC
CAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCA
GTGGCGGTGGCGGTAGCAGTAGCAGTGGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAA
CCACCGAATGTGCATTCCACTAG

consensusID : consensus_4230#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAGTAGCAATAGTAGTATTATGAGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACAATGATCAAGAGGAGATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGCCGAACCCCAACATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTAACGCGGTGCCATTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACGCAGGACAATCGTGCCCTGGCGGTACGATACGACACCAATCCACCGGCTGCCGCCACAATCAAGCCAGTTTTACGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCAAATAGGCCTACCGAGCACGATGGAAAACAAGGAAA]

[+] EMBL BM589554             [CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAGTAGCAATAGTAGTATTATGAGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACAATGATCAAGAGGAGATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGCCGAACCCCAACATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTAACGCGGTGCCATTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACGCAGGACAATCGTGCCCTGGCGGTACGATACGACACCAATCCACCGGCTGCCGCCACAATCAAGCCAGTTTTACGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCAAATAGGCCTACCGAGCACGATGGAAAACAAGGAAA]




>consensus_4230#1
CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTG
CCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCC
ACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGC
ATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGC
ATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAGTAGCAATAGTAGTATTATG
AGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACAATGAT
CAAGAGGAGATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGCCGAACCCCAAC
ATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTAACGCGGTGCCA
TTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACGCAGGACAATCGT
GCCCTGGCGGTACGATACGACACCAATCCACCGGCTGCCGCCACAATCAAGCCAGTTTTA
CGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCAAATAGGCCTACCGAGCACG
ATGGAAAACAAGGAAA

consensusID : consensus_4230#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CCGGGGCTACATCATGGGTTGTGCTTGTTTCAAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGT]

[+] EMBL BM618785             [CCGGGGCTACATCATGGGTTGTGCTTGTTTCAAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGT]




>consensus_4230#2
CCGGGGCTACATCATGGGTTGTGCTTGTTTCAAAGTTCAAGATAATCAAAGGAAAACACC
ACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCA
GCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCA
GCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGG
TGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGA
GCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTT
CTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGT
AAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGG
TGGCATCGCGGGCGGAGGCCAACCACCGAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4230#0      CCGCCCACGCGTCCGGTGCGG------GTGGTGCC-GGTGTCGTGCTAGTGTCCGGGCTG 53
consensus_4230#2      ------------------------------------------------------------
consensus_4230#1      CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTG 60
                                                                                  

consensus_4230#0      GCGCACTCAC-AATCCGCCCATC--AGATAGGGCAACCGCCGCCGCCGTCCCT--CGTTC 108
consensus_4230#2      ------------------------------------------------------------
consensus_4230#1      CCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCC 120
                                                                                  

consensus_4230#0      ACGCGCAGCTTGCCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCA-GCATTTCGCGAAC 167
consensus_4230#2      ------------------------------------------------------CCGGGG 6
consensus_4230#1      ACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGC 180
                                                                                  

consensus_4230#0      GTAGCCGCCAACGCCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAG-GAAAACACC 226
consensus_4230#2      CTA--CATCATGGGTTGTGCTTGTTTCAA---AGTTCAAGATAATCAAAG-GAAAACACC 60
consensus_4230#1      ATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGC 240
                       *      **      ***                       * *    * *       *

consensus_4230#0      ACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCA 286
consensus_4230#2      ACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCA 120
consensus_4230#1      ATCGCGGGCGGA----GGCCAACCACCG-AATGTGCATTCCACTAGTAGCAATAGTAGTA 295
                      * *** ***  *    *******  * * *   *    * **  *  * **   * ** *

consensus_4230#0      GCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCA 346
consensus_4230#2      GCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCA 180
consensus_4230#1      TTATGAGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACA 355
                        *   * ** **      *      *  * *        ** *  *         * **

consensus_4230#0      GCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGG 406
consensus_4230#2      GCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGG 240
consensus_4230#1      --ATGATCAAGAGGAG--ATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGC-- 409
                        *  * ** * * **     *   ***  *  * *         * *    *   **  

consensus_4230#0      TGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCAT--ATCGTGCTGTCG 464
consensus_4230#2      TGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCAT--ATCGTGCTGTCG 298
consensus_4230#1      CGAACCCCAACATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTA 469
                       *  * *   ***   ****    * * *   *    **    **   * *      *  

consensus_4230#0      GAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATG 524
consensus_4230#2      GAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATG 358
consensus_4230#1      ACGC-GGTGCCATTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACG 528
                        ** *  *  *  *  *  * ** **  * ***  **  *** ***     * ** * *

consensus_4230#0      TTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCG-CGGGTGG 583
consensus_4230#2      TTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCG-CGGGTGG 417
consensus_4230#1      CA------GGACAATCGTGCCCTGGC-GGTACGATACGACACCAATCCACCGGCTGCCGC 581
                              *  **  *   * ***** ** ***      ***   **** ** * *  * 

consensus_4230#0      CGTAAGCATGGGAGGCA-GTGGCGGTGGCGG---------TAGCAGTAGCAGTGGGTGGC 633
consensus_4230#2      CGTAAGCATGGGAGGCA-GTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGG-TGGC 475
consensus_4230#1      CACAATCAAGCCAGTTTTACGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCA 641
                      *  ** ** *  **        *   **            * **    *  * *  *   

consensus_4230#0      GGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAG 683
consensus_4230#2      GGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGT------------ 513
consensus_4230#1      AATAGGCCTACCGAGCACGATGGAAAACAAGGAAA--------------- 676
                        * *    * ** *  **  **  *** *   **