cluster # 4240

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Anopheles gambiae
cluster # 4240 cluster # 4240 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4240#0 length = 645 sequences # 1

consensus_4240#1 length = 633 sequences # 1
consensus_4240#2 length = 601 sequences # 1

consensusID : consensus_4240#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [ATCGCCCGAGTGTCATTTCGGAAGAAAGCAGGCAAAGGAACCGAAATAACAAACCGTTCAAAAGCAAAAAAAAATATATAGAAACACAAAACCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATCTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCTGTCGTGCGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTAGTTGTTTTTATCAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCACGAGTCCTGCTGCTTCTTATACGGATGTGATTGGCTCCACGCTTTCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACAATAGGAGATGCGTTACCTTTTACTCTGCTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCACTAACAGCATAATGATTGAAATAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAGCAAAGTGAAGNGGGAN]

[+] EMBL AL931712             [ATCGCCCGAGTGTCATTTCGGAAGAAAGCAGGCAAAGGAACCGAAATAACAAACCGTTCAAAAGCAAAAAAAAATATATAGAAACACAAAACCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATCTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCTGTCGTGCGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTAGTTGTTTTTATCAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCACGAGTCCTGCTGCTTCTTATACGGATGTGATTGGCTCCACGCTTTCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACAATAGGAGATGCGTTACCTTTTACTCTGCTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCACTAACAGCATAATGATTGAAATAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAGCAAAGTGAAGNGGGAN]




>consensus_4240#0
ATCGCCCGAGTGTCATTTCGGAAGAAAGCAGGCAAAGGAACCGAAATAACAAACCGTTCA
AAAGCAAAAAAAAATATATAGAAACACAAAACCACTCGGCAAGACACAACAAAACAAGCC
TAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATCTCCATGGAGCATGGAAATTAAGCG
GGGTTTTTCCCTGTCGTGCGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCC
TCTGCTTGTTGTTAGTTGTTTTTATCAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGG
GAACTGTTTTGGCACACAAACAGCATAGCACGAGTCCTGCTGCTTCTTATACGGATGTGA
TTGGCTCCACGCTTTCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAAC
CCAAACAAACAAAAAAACACACAAACAATAGGAGATGCGTTACCTTTTACTCTGCTTTTC
GTTATTTGATTAGTGTGTAGGTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCAC
TAACAGCATAATGATTGAAATAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGC
AATTAGCAAAACCAACGAGAATCCTTAAGCAAAGTGAAGNGGGAN

consensusID : consensus_4240#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGAAGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTGCAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAGCAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAATAGAAACACAAAATCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTGTTGTTTTTATCAATTTCCCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCATGAGTCCTGCTGCTTCTTATACGGATATGATTGGCTCCACGCTTCCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACATTAGGGAGATGTGTTCCTTTTACTCTGCTTTTCGTTAT]

[+] EMBL BM622105             [GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGAAGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTGCAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAGCAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAATAGAAACACAAAATCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTGTTGTTTTTATCAATTTCCCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCATGAGTCCTGCTGCTTCTTATACGGATATGATTGGCTCCACGCTTCCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACATTAGGGAGATGTGTTCCTTTTACTCTGCTTTTCGTTAT]




>consensus_4240#1
GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGA
AGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTG
CAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAG
CAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAATAGAAACACAAAA
TCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAA
ACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCCGGGTTC
GTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTGTTGTTTTTATCAATTTC
CCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCATG
AGTCCTGCTGCTTCTTATACGGATATGATTGGCTCCACGCTTCCTCTTATTTTCCATCGT
TGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACATTAGG
GAGATGTGTTCCTTTTACTCTGCTTTTCGTTAT

consensusID : consensus_4240#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTTGCGATCGTCGCTAACAGCATAATGATTGAAATAATCGAATCTCATTGAGAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGGAGAAAGCAGCTTTTACCCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCCCTTAACAAAACATGGCAGAAAATTTTAATTGTGAAATGTTTTTTTGAACGAAGGTGTAGCGCTACCCGAAATGTGAAAATCCTTAATGTAGATTTTAGTATTACTTAAGGTAGAACGATACGAGGGAAGAAAGTGCGTAATGGAATGGAAAGTATACGTATCACGAAAATACGACAAATAGAAAGAGAGAAGAGAGTGAAAGATGGCAGTATCGGCCGGTATGAATTCCAGTTGTTGGCAGTTTTTAGCAGTACGAAATTTCACACACACACACACACACACTACAAAAACCCCTAATACAATTCATTCGAACAGTT]

[+] EMBL BM627687             [CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTTGCGATCGTCGCTAACAGCATAATGATTGAAATAATCGAATCTCATTGAGAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGGAGAAAGCAGCTTTTACCCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCCCTTAACAAAACATGGCAGAAAATTTTAATTGTGAAATGTTTTTTTGAACGAAGGTGTAGCGCTACCCGAAATGTGAAAATCCTTAATGTAGATTTTAGTATTACTTAAGGTAGAACGATACGAGGGAAGAAAGTGCGTAATGGAATGGAAAGTATACGTATCACGAAAATACGACAAATAGAAAGAGAGAAGAGAGTGAAAGATGGCAGTATCGGCCGGTATGAATTCCAGTTGTTGGCAGTTTTTAGCAGTACGAAATTTCACACACACACACACACACACTACAAAAACCCCTAATACAATTCATTCGAACAGTT]




>consensus_4240#2
CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTCGTTATTTG
ATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTTGCGATCGTCGC
TAACAGCATAATGATTGAAATAATCGAATCTCATTGAGAAGCGAAGGGCGCGCGAGAAGC
AATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGGAGAAAGCAGCTTTTAC
CCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCCCTTAACAAAACATGGC
AGAAAATTTTAATTGTGAAATGTTTTTTTGAACGAAGGTGTAGCGCTACCCGAAATGTGA
AAATCCTTAATGTAGATTTTAGTATTACTTAAGGTAGAACGATACGAGGGAAGAAAGTGC
GTAATGGAATGGAAAGTATACGTATCACGAAAATACGACAAATAGAAAGAGAGAAGAGAG
TGAAAGATGGCAGTATCGGCCGGTATGAATTCCAGTTGTTGGCAGTTTTTAGCAGTACGA
AATTTCACACACACACACACACACACTACAAAAACCCCTAATACAATTCATTCGAACAGT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4240#0      ------------------------------------------------------------
consensus_4240#1      GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGA 60
consensus_4240#2      --------CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTC 52
                                                                                  

consensus_4240#0      ------------------------------------------------------------
consensus_4240#1      AGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTG 120
consensus_4240#2      GTTAT---TTGATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTT 109
                                                                                  

consensus_4240#0      -------------------------------ATCGCCCGAGTGTCA-TTTCGGAAGAAAG 28
consensus_4240#1      CAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAG 180
consensus_4240#2      GCGATCGTCGCTAACAGCATA--ATGATTGAAATAATCGAATCTCA--TTGAGAAGCGAA 165
                                                     *      **   ***  **  ****  * 

consensus_4240#0      CA-GGCAAAGGAACCGAAATAACAAACCG-TTCAAAAGCAAAAAAAAATATATAGAAACA 86
consensus_4240#1      CAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAA-----TAGAAACA 235
consensus_4240#2      GGGCGCGCGAGAAGC-AATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGG 224
                          **    *** * ** ** **** *     * ** *   *****     *  *    

consensus_4240#0      CAAAACCACTCGGCAAGACACAACAAAACAAGC-CTAAGAGGAGGAGCACAGGGCGCAGC 145
consensus_4240#1      CAAAATCACTCGGCAAGACACAACAAAACAAGC-CTAAGAGGAGGAGCACAGGGCGCAGC 294
consensus_4240#2      AGAAAGCAGCTTTTACCCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCC 284
                        *** **      *    *   * ** *  *  **  * *     ***  ** **   *

consensus_4240#0      ACAAAAACATCTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCTGTCGTGCGGCGCC 205
consensus_4240#1      ACAAAAACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCC 354
consensus_4240#2      CTTAACAAAACATGGCAGAAAATTTTAATTGTGAAATGTTTTT-----TTGAACGAAGGT 339
                         ** * *        **  **   ****  *    ******     * *  **  *  

consensus_4240#0      GGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTAGTTGTTTTTAT 265
consensus_4240#1      GGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTT-GTTGTTTTTAT 413
consensus_4240#2      GTAG-CGCTACCCGAAATGTGAAAA------------TCCTTAATGTA-GATTTTAGTAT 385
                      *    ** *    **  * *  *              * ***  ***  * * **  ***

consensus_4240#0      CAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCA 325
consensus_4240#1      CAATTTCCCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCA 473
consensus_4240#2      TACTTAAGGTAGAACGATACGAGGGAAGAAAGTGCGTAATGGAATGGAAAGTATAC-GTA 444
                       * **    *     * *   * *       *** * * **   *** *   * ** * *

consensus_4240#0      TAGCACGAGTCCTGCTGCTTCTTATACGGATGTGATTGGCT--CCACGCTTTCTCTTATT 383
consensus_4240#1      TAGCATGAGTCCTGCTGCTTCTTATACGGATATGATTGGCT--CCACGCTTCCTCTTATT 531
consensus_4240#2      TCACGAAAATACGACAAATAGAAAGAGAGAAGAGAGTGAAAGATGGCAGTATCGGCCGGT 504
                      *  *   * * *  *   *    * *  **   ** **        *  *  *      *

consensus_4240#0      TTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACA 443
consensus_4240#1      TTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACA 591
consensus_4240#2      ATGAATTCCAGTT---GTTGGCAGTTTTTAGCAGTACGAAATTTCACACACACACACACA 561
                       *  **    * *   *   *  **  ***     **  **    *** * * *******

consensus_4240#0      AACAATAGG-AGATGCGT--TACCTTTTACTCTGCTTTTCGTTATTTGATTAGTGTGTAG 500
consensus_4240#1      AACATTAGGGAGATGTGT--T-CCTTTTACTCTGCTTTTCGTTAT--------------- 633
consensus_4240#2      CACACTACAAAAACCCCTAATACAATTCATTCGAACAGTT-------------------- 601
                       *** **   * *    *  * *  ** * **      *                     

consensus_4240#0      GTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCACTAACAGCATAATGATTGAAA 560
consensus_4240#1      ------------------------------------------------------------
consensus_4240#2      ------------------------------------------------------------
                                                                                  

consensus_4240#0      TAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGA 620
consensus_4240#1      ------------------------------------------------------------
consensus_4240#2      ------------------------------------------------------------
                                                                                  

consensus_4240#0      ATCCTTAAGCAAAGTGAAGNGGGAN 645
consensus_4240#1      -------------------------
consensus_4240#2      -------------------------