cluster # 4249

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Anopheles gambiae
cluster # 4249 cluster # 4249 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4249#0 length = 692 sequences # 2

consensus_4249#1 length = 644 sequences # 1

consensusID : consensus_4249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACG-ATTTGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTGTGTGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGTGTGTTGTTATCACTATAATTTGGTTTAAAGTTTT]

[+] EMBL BM615049             [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACG ATTTGATTACGAAATTGTGTTTAACCA                                                                                                                                               ]
[+] EMBL BM632960             [                        CCGGCAAAGACGAATAATTTTTGGACACACTGTATGC ATTGAAGAGAAACATAGAGAGCAAA AAAGGAACAAACACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCACTATTTTTGAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAATCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTCTGTACGAATTGGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTGTGTGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGTGTGTTGTTATCACTATAATTTGGTTTAAAGTTTT]




>consensus_4249#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCAAAGACGAATAATTTTTGGACTCACTGTATG
CAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAG
ATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGA
ATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGAC
GAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTA
TTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTG
TTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATT
TATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGC
CACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTGT
GTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTGTG
TGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGTGT
GTTGTTATCACTATAATTTGGTTTAAAGTTTT

consensusID : consensus_4249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGGTGTGTGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATTCG]

[+] EMBL BM579061             [CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGGTGTGTGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATTCG]




>consensus_4249#1
CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTATGCAA
TTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATG
AAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATG
CAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAG
AAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTT
TTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTT
TCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTAT
TAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCAC
GTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTGTGTT
TAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGGTGTG
TGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4249#0      CCGCCCACGCGTCCGCCCACGC-GTCCGGCAAAGACGAATAATTTTTGGACTCACTGTAT 59
consensus_4249#1      ----CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTAT 56
                          ** *   *      *  *  * * ********************************

consensus_4249#0      GCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTA 119
consensus_4249#1      GCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTA 116
                      ************************************************************

consensus_4249#0      GATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGG 179
consensus_4249#1      GATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGG 176
                      ************************************************************

consensus_4249#0      AATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGA 239
consensus_4249#1      AATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGA 236
                      ************************************************************

consensus_4249#0      CGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCT 299
consensus_4249#1      CGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCT 296
                      ************************************************************

consensus_4249#0      ATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTT 359
consensus_4249#1      ATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTT 356
                      ************************************************************

consensus_4249#0      GTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATAT 419
consensus_4249#1      GTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATAT 416
                      ************************************************************

consensus_4249#0      TTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGG 479
consensus_4249#1      TTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGG 476
                      ************************************************************

consensus_4249#0      CCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTG 539
consensus_4249#1      CCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTG 536
                      ************************************************************

consensus_4249#0      TGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTG- 598
consensus_4249#1      TGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGG 596
                      ************************************************ ******* ** 

consensus_4249#0      TGTGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGT 658
consensus_4249#1      TGTGTGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATT-CG----------- 644
                      ***** ***************************************  **           

consensus_4249#0      GTGTTGTTATCACTATAATTTGGTTTAAAGTTTT 692
consensus_4249#1      ----------------------------------