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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTGCTTCAGCAGCCAGGATCACACTGTCCTAGTCTTCCCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGCCTTCCACTTCCCATCCCACCTCGCCCCCACGTCACTCGATCGTGTGTACAGCAACTCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGATTGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATCTATTCACCGTGTTCTTCGCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAATGCGTTGTACCGAAATTTGCGATTCTACTAAGTCAGTGAAGGTTTTTGTAGTTTGTGTGTGTGTGGTTT]
[+] EMBL BM588054 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCTTCAGCAGCCAGGATCACACTGTCCTAGTCTTCCCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGCCTTCCACTTCCCATCCCACCTCGCCCCCACGTCACTCGATCGTGTGTACAGCAACTCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGATTGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATCTATTCACCGTGTTCTTCGCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAATGCGTTGTACCGAAATTTGCGATTCTACTAAGTCAGTGAAGGTTTTTGTAGTTTGTGTGTGTGTGGTTT]
[+] EMBL BM646774 [ ccgCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGCCTTCCACTTCCCATCCCACCTCGCCCCCACGTCACTCGATCGTGTGTACAGCAACTCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGATTGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATCTATTCACCGTGTTCTTCGCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTCCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGA ]
consensusID : consensus_4258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[CCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAGTAAGAACGAATAATAATTTCGAGCGTTGGCACCTTCGTTGGGCAAAACAGCAACACTACTACTATTACTACCACACACCCACTAACACATTGGCCCCCACCGCCTCTTTGCCGACCAATAATAGGGGGTTCGTCGCTTAGACGAATAACTGTTTTGTGCTATGCTGCTATTACTACTTCTACTACTACTACTACTACTACTATTACCACAATTACTACCACATCAGCATCGTTCTGCCACTAATAAGCTACCCTTCCTTCCTATGCTAACCTTAACTCTCTGCCGGCGTGATGCTCGCCACGATAGCGTGTAAGCGAAGCGAGGGAACACACACGCCGT]
[+] EMBL BX627529 [CCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAGTAAGAACGAATAATAATTTCGAGCGTTGGCACCTTCGTTGGGCAAAACAGCAACACTACTACTATTACTACCACACACCCACTAACACATTGGCCCCCACCGCCTCTTTGCCGACCAATAATAGGGGGTTCGTCGCTTAGACGAATAACTGTTTTGTGCTATGCTGCTATTACTACTTCTACTACTACTACTACTACTACTATTACCACAATTACTACCACATCAGCATCGTTCTGCCACTAATAAGCTACCCTTCCTTCCTATGCTAACCTTAACTCTCTGCCGGCGTGATGCTCGCCACGATAGCGTGTAAGCGAAGCGAGGGAACACACACGCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4258#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTGCTTCAGCAGCCAGGATCACACTGTCCTAGT 60
consensus_4258#1 ---CCACCGTCGCCGGCCAACGGTTCGGT-TTCCCGCA-CACGTCCCAGTTCGGGCTCGC 55
** ** *** *** ** **** * * *** * * ** * ** *
consensus_4258#0 CTTCCCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGC 120
consensus_4258#1 CTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTAC 115
** * * * * * * ** * * * *** ** ** * *** *
consensus_4258#0 CTTCCAC-TTCCCATCCCACCTCGCCCCCA----CGTCACTCGATCGTGTGTACAGCAAC 175
consensus_4258#1 TTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGC 175
** ** * *** * ** * ** ** * * **** * ** *
consensus_4258#0 TCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGAT 235
consensus_4258#1 GCCCGCCGATGCTCC-AGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTT 234
** ** ** ** ** * * ****** ** * * * ** ** * *
consensus_4258#0 TGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATC-TATTCACCGTGTTCTTC 294
consensus_4258#1 TCGTGCCA--CCGAATACGC---CCCAGAGTAAGAACGAATAATAATTTCGAGCGTTGGC 289
* ** * ** ** * ** * * * ** **** ** * * * *
consensus_4258#0 GCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTT-CCCGCACACGTC 353
consensus_4258#1 ACCTTCGTTGGGCAAAACAGCAACACTACTA-CTATTACTACCACACACCCACTAACACA 348
** **** * * ** * * * * * * *** * **
consensus_4258#0 CCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACA 413
consensus_4258#1 TTGGCCCCCAC-CGCCTCTTTGCCGACCAATAATAGGGGGTTCGTCGC-TTAGACGAATA 406
* * * ****** ** * * * ** *** ** * * * *
consensus_4258#0 GGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGT 473
consensus_4258#1 A---CTGTTTTGTGCT----ATGCTGCTATTA-----CTACTTCTACTACTACTACTACT 454
*** ** ** * **** *** * * * * * * ** *
consensus_4258#0 TGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGC 533
consensus_4258#1 ACTACTATTACCA-CAATTACTACCACATCAGCATCGTTCTGCC-ACTAATAAGCTACCC 512
* * *** * * * *** ** ** * * ** *
consensus_4258#0 TTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAG-AATGCGTTGTAC-CGAAATTTG 591
consensus_4258#1 TTCCT-------TCCTATGCTAACCTTAACTCTCTGCCGGCGTGATGCTCGCCACGATAG 565
**** * *** * * ** * * * * ** * * * * *
consensus_4258#0 CGATTCTACTAAGTCAGTGAAGGTTTTTGTAGTTTGTGTGTGTGTGGTTT 641
consensus_4258#1 CGTGTAAGCGAAGCGAGGGAACACACACGCCGT----------------- 598
** * * *** ** *** * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||