cluster # 4264

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Anopheles gambiae
cluster # 4264 cluster # 4264 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4264#0 length = 1076 sequences # 2

consensus_4264#1 length = 669 sequences # 1

consensusID : consensus_4264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1076
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCGCCGTAAGCGTGTGCGGGGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCGTCCTGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAAGAATGGCGTGTGTTCGTCGTCAAACACGCGCACACAACATACACACAGCTATATTATGCACATACACTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTCTGCGATTTACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAAAACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTACATTTCCCGCTGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATCGTTGCAACGTTGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGGACGAGTTTTTTTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAGCGTTCGTGTCCGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTGCGGCGTTTGCAGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTGTGTTTTAAATCGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACAACACTA]

[+] EMBL BM647789             [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCGCCGTAAGCGTGTGCGGGGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCGTCCTGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAAGAATGGCGTGTGTTCGTCGTCAAACACGCGCACACAACATACACACAGCTATATTATGCACATACACTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTCTGCGATTTACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAAAACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGT                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX608962             [                                                                                                                                                                                                                                                                                                                                                                          ttatATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTTTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGG  ATGCCAATCAAAACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTACATTTCCCGCTGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATCGTTGCAACGTTGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGGACGAGTTTTTTTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAGCGTTCGTGTCCGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTGCGGCGTTTGCAGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTGTGTTTTAAATCGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACAACACTA]




>consensus_4264#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCG
CCGTAAGCGTGTGCGGGGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCGTCC
TGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAAGAATGGCGTGTGTTCG
TCGTCAAACACGCGCACACAACATACACACAGCTATATTATGCACATACACTACACAGCA
GGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTCTGCGATT
TACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTCTCTCTC
TTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTT
GTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACAC
AAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGT
AATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAAAACAGAAAAA
TGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGTATGCA
ATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTACATTTCCCGC
TGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATCGTTGCAACGT
TGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGGACGAGTTTTT
TTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAGCGTTCGTGTC
CGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTGCGGCGTTTGC
AGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTGTGTTTTAAAT
CGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACAACACTA

consensusID : consensus_4264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [AAAATGGAGTGTGACCGGCTGTTTTCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTTCCCCTCTTCCGGTCATCGAATGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGAAAAAAGAAAGGCGTGTGTTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTATATTATGCACATACATTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTTGTCTGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTTCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCAATCAAAAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCG]

[+] EMBL BX608552             [AAAATGGAGTGTGACCGGCTGTTTTCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTTCCCCTCTTCCGGTCATCGAATGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGAAAAAAGAAAGGCGTGTGTTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTATATTATGCACATACATTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTTGTCTGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTTCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCAATCAAAAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCG]




>consensus_4264#1
AAAATGGAGTGTGACCGGCTGTTTTCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTT
CCCCTCTTCCGGTCATCGAATGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGA
AAAAAGAAAGGCGTGTGTTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTAT
ATTATGCACATACATTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCA
AACACAATGCACTTGTCTGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGA
ATGCGTCGTTTTTTTTTTCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATG
ATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTGCTACTAACAA
TTAAAAGTGATCGTCACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACG
TACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTT
GGATATGCAATCAAAAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCAC
CACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTA
AGGGTACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4264#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCG 60
consensus_4264#1      ------------------------------------AAAATGGAGTGTGACCGGCTGTTT 24
                                                           *    ****  **    *  *  

consensus_4264#0      CCGTAAGCGTGTGCGG---GGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCG 117
consensus_4264#1      TCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTTCCCCTCTTCCGGTCATCGAA---- 80
                       **   * *   ***    **    **  ** **  *  ** **  **     ***    

consensus_4264#0      TCCTGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAA-GAATGGCGTGTG 176
consensus_4264#1      ---TGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGAAAAAAGAAAGGCGTGTG 137
                         ***************** *************** ********** *** ********

consensus_4264#0      TTCGTCGTCAAACACG---CGCACACAACATACACACAGCTATATTATGCACATACACTA 233
consensus_4264#1      TTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTATATTATGCACATACATTA 197
                      ** *********** *   ************************************** **

consensus_4264#0      CACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTC 293
consensus_4264#1      CACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTTGTC 257
                      ******************************************************** ***

consensus_4264#0      TGCGATTTACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTT 353
consensus_4264#1      TGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTT 317
                      ************* ******* *** **********************************

consensus_4264#0      ---CTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCT 410
consensus_4264#1      TCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCT 377
                         *********************************************************

consensus_4264#0      TTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTC 470
consensus_4264#1      TTGCTTATTTGTTTCTTTTCTCCCTTTTTTTT--GCTACTAACAATTAAAAGTGATCGTC 435
                      ********************************  **************************

consensus_4264#0      ACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATC 530
consensus_4264#1      ACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACGTACTGGGGACGGATC 495
                      ************** ********* ***********************************

consensus_4264#0      GCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAA 590
consensus_4264#1      GCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGC-AATCAA 554
                      ***************************************************** ******

consensus_4264#0      AACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACC 650
consensus_4264#1      AAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCACCACGCAAAACCACC 614
                      ** ************* ******************** **********************

consensus_4264#0      CACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTA 710
consensus_4264#1      CACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCG----- 669
                      *******************************************************     

consensus_4264#0      CATTTCCCGCTGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATC 770
consensus_4264#1      ------------------------------------------------------------
                                                                                  

consensus_4264#0      GTTGCAACGTTGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGG 830
consensus_4264#1      ------------------------------------------------------------
                                                                                  

consensus_4264#0      ACGAGTTTTTTTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAG 890
consensus_4264#1      ------------------------------------------------------------
                                                                                  

consensus_4264#0      CGTTCGTGTCCGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTG 950
consensus_4264#1      ------------------------------------------------------------
                                                                                  

consensus_4264#0      CGGCGTTTGCAGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTG 1010
consensus_4264#1      ------------------------------------------------------------
                                                                                  

consensus_4264#0      TGTTTTAAATCGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACA 1070
consensus_4264#1      ------------------------------------------------------------
                                                                                  

consensus_4264#0      ACACTA 1076
consensus_4264#1      ------