cluster # 4272

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Anopheles gambiae
cluster # 4272 cluster # 4272 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4272#0 length = 703 sequences # 2

consensus_4272#1 length = 677 sequences # 1

consensusID : consensus_4272#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 703
fasta sequence

                              [CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTGTCTCGC-AGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGCAAAGTGAAATTGTGGCAAAGGGAAATAATACTT---AAAAAA-AGTGCCAGGCAGAAACAGTGCGAATGTGAATGTTGATGAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGC--------ACCTGTGATACTTGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAATTGGCATTGCATTACGTGTATGTGTGTG--TTTTTTTGTTGAGATTTTTGTCCATTTCTTAACAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCA-TTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGA]

[+] EMBL BM612816             [CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTGTCTCGC AGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGCAAAGTGAAATTGTGGCAAAGGGAAATAATACTT   AAAAAA AGTGCCAGGCAGAAACAGTGCGAATGTGAATGTTGATGAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGC        ACCTGTGATACTTGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAATTGGCATTGCATTACGTGTATGTGTGTG  TTTTTTTGTTGAGATTTTTGTCCATTTCTTAACAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCA TTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGA]
[+] EMBL BX606041             [    TTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGTCGTTCGTTTCACGTGGCTGTCTCGCGAGGAGAGAGCGAAACCCACAACAAACGAACGTTACACGCCCGATCGTCGGGCAAAGTGAAATTGTGGCAAAGGGAAAGAATACTTTAAAAAAAACAGTGCCAGGCAGAAACAGTGCGAATGTGAATGTTGATAAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGATTTAAAAAACAACTAAATGGCACATAATTACCTGTGATACTTGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAATTGGCATTGCATTACGTGTATGTGTGTGTTTTTTTTTGTTGAGATTTTTGTCCATTTCTTAACAAAGCCGAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGCGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCgactg                        ]




>consensus_4272#0
CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTG
TCTCGCAGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGCAA
AGTGAAATTGTGGCAAAGGGAAATAATACTTAAAAAAAGTGCCAGGCAGAAACAGTGCGA
ATGTGAATGTTGATGAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTT
CATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGCACCTGTGATACT
TGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCT
GTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAA
TTGGCATTGCATTACGTGTATGTGTGTGTTTTTTTGTTGAGATTTTTGTCCATTTCTTAA
CAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAA
TGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAA
GCTCGTCGGAAAATCTGTACACCATTCCGCAACGACAACACCGACGACAACGCCAACGAG
ACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGA

consensusID : consensus_4272#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [ATTCNCCCGAGGTTCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGAACCTGCAATGAAAAATGTTAACACAACGACATCTGGACCAGAAACNGACCTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTCAGGAAAGCCCCTGTCCGAATCCGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCAGCCTTCGTCGCCTTCGTCCAACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAAGCGAAAGATCAACTGCAAAACGCGAATCTACAAGTGCATCAAGCGCATCCTGAAACGCAACTCCATTCATGCCAGCCCGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACCCGAGAAGTCATCGAACTGCCGGCCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGACACTGCTAGAGAAACAACACCGTGATCTCGAGTACGATGTCAACCTGGCCAAGTGTGTCGAACAAGCCTGCCTTTAT]

[+] EMBL AL931846             [ATTCNCCCGAGGTTCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGAACCTGCAATGAAAAATGTTAACACAACGACATCTGGACCAGAAACNGACCTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTCAGGAAAGCCCCTGTCCGAATCCGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCAGCCTTCGTCGCCTTCGTCCAACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAAGCGAAAGATCAACTGCAAAACGCGAATCTACAAGTGCATCAAGCGCATCCTGAAACGCAACTCCATTCATGCCAGCCCGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACCCGAGAAGTCATCGAACTGCCGGCCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGACACTGCTAGAGAAACAACACCGTGATCTCGAGTACGATGTCAACCTGGCCAAGTGTGTCGAACAAGCCTGCCTTTAT]




>consensus_4272#1
ATTCNCCCGAGGTTCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTG
CGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAA
AATCTGTACACCATTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGC
AGCAGCAGCGACTGCACAATCAGCTGAATGGAACCTGCAATGAAAAATGTTAACACAACG
ACATCTGGACCAGAAACNGACCTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTC
AGGAAAGCCCCTGTCCGAATCCGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCA
GCCTTCGTCGCCTTCGTCCAACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAA
GCGAAAGATCAACTGCAAAACGCGAATCTACAAGTGCATCAAGCGCATCCTGAAACGCAA
CTCCATTCATGCCAGCCCGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACCCGAGAAG
TCATCGAACTGCCGGCCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGA
CACTGCTAGAGAAACAACACCGTGATCTCGAGTACGATGTCAACCTGGCCAAGTGTGTCG
AACAAGCCTGCCTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4272#0      CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTG 60
consensus_4272#1      -------------------------------ATTCNCCCGAGGTTCGCTTC--GGAGCAC 27
                                                     *  *   **  ***** ***  *  **  

consensus_4272#0      TCTCGCAGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGC-A 119
consensus_4272#1      TACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGC--GACGAGCCGGAGAGTGA 85
                      *   * *  ** **  ***     **      *   **  *  * *    **  * *  *

consensus_4272#0      AAGTGAAATTGTGGCAAAGGGAAATAATACTTAAAAA---AAGTGCCAG---GCAGAAAC 173
consensus_4272#1      AAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTCCGCAACGAC 145
                      ***    *    *** ********         ****        ***    ***   **

consensus_4272#0      AGTGCGAATGTGAATGTTGATGAAAC----GTAACTGTGCAAGGGAATAAATACTACTTC 229
consensus_4272#1      AACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCT 205
                      *   *  * *  ** *   * ** **    * * * *    ** ** *  * * *     

consensus_4272#0      CAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGCA 289
consensus_4272#1      GAATGGAACCTG--CAATGAAAAATGTTAACACAACGACATCTGGACCAG--AAACNGAC 261
                       ** **    *   *  *****   *  **      *   *    * **   ***  *  

consensus_4272#0      CCTGTGATACTTGTG-GCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTG-GAATA 347
consensus_4272#1      CTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTCAGGAAAGCCCCTGTCCGAATC 321
                      *  **   * **    **  *  ***   ** *  *** *  * *      **  **** 

consensus_4272#0      AAGTGTG-----GTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTC 402
consensus_4272#1      CGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCAGCCTTCGTCGCC--TTCGTCC 379
                         *  *      * **  * *** *  *  *   *   * * *   ***   * * * *

consensus_4272#0      AGTGCGGAATTATTGAAATTGGCATT-GC-ATTACGTGTATGTGTGTGTTTTTTTGTTGA 460
consensus_4272#1      AACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAAGCGAAAGATCAACTGC-AA 438
                      *      *  *  ***        ** ** **     * * * *   * *    **   *

consensus_4272#0      GATTTTTGTCCATTTCTTAACAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTA 520
consensus_4272#1      AACGCGAATCTACAAGTGCATCAAGCGCATCCTG-AAACGCAACTCCATTCATGCCAGCC 497
                       *      ** *    *  *  **** **  **  ** *      *  ***    **   

consensus_4272#0      CGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAG-TGAAAG 579
consensus_4272#1      CGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACC--CGAGAAGTCATCGAACTGCCGG 555
                      **   *     *  **  *    * ** *  *      ***  ** *   **  **   *

consensus_4272#0      CAGCAGCCCGGCCAAGGGAAA-----GCTCGTCGGAAAATCTGTACACCATTCCGCAACG 634
consensus_4272#1      CCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGACACTGCT--AGAGAA 613
                      * ***  ***  *   * *       *    ***  * ***   ****   *    *   

consensus_4272#0      ACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAG 694
consensus_4272#1      ACAACACCG-TGAT--CTCGAGTACGATGTCAACCTGGCCAAGTGTGTC-GAACAAGC-- 667
                      *********  **   * * *    **   ** *     **   * * * * **** *  

consensus_4272#0      CTGAATGGA- 703
consensus_4272#1      CTGCCTTTAT 677
                      ***  *  *