cluster # 4289

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Anopheles gambiae
cluster # 4289 cluster # 4289 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4289#0 length = 698 sequences # 1

consensus_4289#1 length = 693 sequences # 1
consensus_4289#2 length = 602 sequences # 1

consensusID : consensus_4289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [CCGCCCACGCGTCCGAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCGGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTCCCCCGCAAACACACAGATACCGTACATCGAGATCGAGT]

[+] EMBL BM582731             [CCGCCCACGCGTCCGAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCGGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTCCCCCGCAAACACACAGATACCGTACATCGAGATCGAGT]




>consensus_4289#0
CCGCCCACGCGTCCGAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGG
AAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGA
ATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGC
GAGCGGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGA
AATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACA
TTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAA
GGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAA
ATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTT
GTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTG
CCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATC
GAAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTC
CCCCGCAAACACACAGATACCGTACATCGAGATCGAGT

consensusID : consensus_4289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGATTCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTCTAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAAATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGGGAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGATCGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGAACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCTTAGCAACTTGTAAACACCCACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAAACTTNNACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGTCAACACTTACCAACCTNACACACCNTCTCTCCACTNTAC]

[+] EMBL AL930177             [TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGATTCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTCTAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAAATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGGGAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGATCGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGAACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCTTAGCAACTTGTAAACACCCACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAAACTTNNACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGTCAACACTTACCAACCTNACACACCNTCTCTCCACTNTAC]




>consensus_4289#1
TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC
GAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGG
TAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGAT
TCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTC
TAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAA
ATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGG
GAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGAT
CGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGA
ACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCTTAGCAACTTGTAAACA
CCCACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAAACTTNN
ACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGTCAACAC
TTACCAACCTNACACACCNTCTCTCCACTNTAC

consensusID : consensus_4289#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CCGGTTCCTTCACAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCAAGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAA]

[+] EMBL BM582696             [CCGGTTCCTTCACAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCAAGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAA]




>consensus_4289#2
CCGGTTCCTTCACAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAA
AGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAAT
GCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGA
GCAAGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAA
ATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACAT
TACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAG
GATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAA
TAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTG
TATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGC
CAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCG
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4289#0      -CCGCCCACGCGT---CCG-AGGG-AAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC 54
consensus_4289#2      ----CCGGTTCCT---TCACAGGG-AAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC 52
consensus_4289#1      TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC 60
                          **      *    *  ** * ***********************************

consensus_4289#0      GAGTGGAAAGATC-GTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAA-AGTGTTGG 112
consensus_4289#2      GAGTGGAAAGATC-GTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAA-AGTGTTGG 110
consensus_4289#1      GAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGG 120
                      ************* ************************************* ********

consensus_4289#0      TAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGG---TTTAGATTTA----GAT 165
consensus_4289#2      TAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGG---TTTAGATTTA----GAT 163
consensus_4289#1      TAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGAT 180
                      *************************************  *   * **    **    ***

consensus_4289#0      TCTGATTTCCAGTGCGAGCG-GAGGACAG-TAAACATGGAGTGAACCGAAAA-TAATCTC 222
consensus_4289#2      TCTGATTTCCAGTGCGAGCAAGAGGACAG-TAAACATGGAGTGAACCGAAAA-TAATCTC 221
consensus_4289#1      TCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTC 240
                      *******************  ******** ********************** *******

consensus_4289#0      TAAATATTCCTACT-TCGAAA-TCAACTAA-TAGTTTGTG-----CTTGGTAAGACACAA 274
consensus_4289#2      TAAATATTCCTACT-TCGAAA-TCAACTAA-TAGTTTGTG-----CTTGGTAAGACACAA 273
consensus_4289#1      TAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAA 300
                      ************** ****** ******** *** ** **     ** * **********

consensus_4289#0      -TAAAAGAAGCTTAATTTAT---TATCACA--TTACACGGGAAAG--CAGCGAACGT--- 323
consensus_4289#2      -TAAAAGAAGCTTAATTTAT---TATCACA--TTACACGGGAAAG--CAGCGAACGT--- 322
consensus_4289#1      ATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGG 360
                       ************** *  *   ******   ********* **   *********    

consensus_4289#0      GGAGTGAA---TACATGGAAT----TTTCTAACAAAGAATCAAAG-----GATCGTGGTT 371
consensus_4289#2      GGAGTGAA---TACATGGAAT----TTTCTAACAAAGAATCAAAG-----GATCGTGGTT 370
consensus_4289#1      GAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGAT 420
                      *   ** *   ******* *     * ***   *** *  ** *       * ***** *

consensus_4289#0      AGTACAGTGGTAAG--ATTGTTGCTTTC-ATACGTGAAAGTG-TTGTAAGTAAATAATGA 427
consensus_4289#2      AGTACAGTGGTAAG--ATTGTTGCTTTC-ATACGTGAAAGTG-TTGTAAGTAAATAATGA 426
consensus_4289#1      CGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGA 480
                       *    **   *    *  ** * *  * ***  **    **  * **  * *    ***

consensus_4289#0      ACAAATATTGTACTTTTTTATA-TAGCAGCTCTACACATTTATTATAATTATTTGTATGT 486
consensus_4289#2      ACAAATATTGTACTTTTTTATA-TAGCAGCTCTACACATTTATTATAATTATTTGTATGT 485
consensus_4289#1      ACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCT-TAGCAACTTGTAAAC 539
                      ****   ***    ***   **  * * **  *   **     * **   * *****   

consensus_4289#0      ACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAAT 546
consensus_4289#2      ACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAAT 545
consensus_4289#1      ACCC-----ACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAA 594
                      ** *        * * *  **     * *   ********   **  *   *   *  * 

consensus_4289#0      ACCAAAGTTCAACATATTCAAACGATCCACT-----ATCAACCGTAACCGTTTGCCATCG 601
consensus_4289#2      ACCAAAGTTCAACATATTCAAACGATCCACT-----ATCAACCGTAACCGTTTGCCATCG 600
consensus_4289#1      ACTTNNACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGT 654
                      **         **     * *  *  **        ** * **    **   * ***   

consensus_4289#0      AAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTCC 661
consensus_4289#2      AA---------------------------------------------------------- 602
consensus_4289#1      CAACACTTACCAACCTNACACACCNTCTCTCCACTNTAC--------------------- 693
                       *                                                          

consensus_4289#0      CCCGCAAACACACAGATACCGTACATCGAGATCGAGT 698
consensus_4289#2      -------------------------------------
consensus_4289#1      -------------------------------------