cluster # 4295

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Anopheles gambiae
cluster # 4295 cluster # 4295 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4295#0 length = 942 sequences # 2

consensus_4295#1 length = 356 sequences # 1

consensusID : consensus_4295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 942
fasta sequence

                              [CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGACCGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTTGGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATAAAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCATCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACCACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGTTGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCATTCGTCATCCCGTACCTGATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCATGCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGCGTCGGTGCTGGCCGTCACCCTGCGGTACCTGGTTGCCTCGTTCAATCCCGAGCTGCCCTGGGCTAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATTGCCCTTGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACGGTAATGCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCACTATGCCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGCTCCGGCAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT]

[+] EMBL BM595852             [CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGACCGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTTGGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATAAAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCATCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACCACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGTTGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCATTCGTCATCCCGTACCTGATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCATGCGTGGTATCGGT                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM589455             [                                                                                                                                                                                                                                                                 ccgAAGCACCCCAATCCACCACCGCCAGCGACGAAAAGCCACCACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGTGGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCGTTCGTCATCCCGTACCTAATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCATGCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGCGTCGGTGCTGGCCGTCACCCTGCGGTACCTGGTTGCCTCGTTCAATCCCGAGCTGCCCTGGGCTAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATTGCCCTTGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACGGTAATGCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCACTATGCCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGCTCCGGCAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT]




>consensus_4295#0
CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGAC
CGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTT
GGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATA
AAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCA
TCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACC
ACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGT
TGGCTTCGGCAATGTGTGGCGCTTCCCGTACACAGCGTTCAAGAACGGTGGCGGTGCATT
CGTCATCCCGTACCTGATTGTACTGTTCATCATCGGACGCCCGATCTACTATCTGGAGAT
GGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCACCTGCCAT
GCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGCGTC
GGTGCTGGCCGTCACCCTGCGGTACCTGGTTGCCTCGTTCAATCCCGAGCTGCCCTGGGC
TAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATTGCCCT
TGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACGGTAAT
GCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCACTATG
CCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGCTCCGG
CAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT

consensusID : consensus_4295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [CGACCCACGCGTCCGCGCGGCACAAGCAAACGCGCGAAACCACAAGACAAGACCAAGAAAGTGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTGCGAGAGAAGGGCCACACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCAACGACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTGATGAAACCTGGAATGCCGACACGCTGCCGGTCGGGGGACTTGCGGGCAACCAGCCCCACCACCACCACAACCATCATCATAAGCATCACACTACGGTCGATCTGAAAGCACCCCAATCCACCACCGCCAGCGACGAAAA]

[+] EMBL BM601471             [CGACCCACGCGTCCGCGCGGCACAAGCAAACGCGCGAAACCACAAGACAAGACCAAGAAAGTGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTGCGAGAGAAGGGCCACACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCAACGACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTGATGAAACCTGGAATGCCGACACGCTGCCGGTCGGGGGACTTGCGGGCAACCAGCCCCACCACCACCACAACCATCATCATAAGCATCACACTACGGTCGATCTGAAAGCACCCCAATCCACCACCGCCAGCGACGAAAA]




>consensus_4295#1
CGACCCACGCGTCCGCGCGGCACAAGCAAACGCGCGAAACCACAAGACAAGACCAAGAAA
GTGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTGCGAGAGAA
GGGCCACACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCAA
CGACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTGATGAAACCTGGAATGCCGACACG
CTGCCGGTCGGGGGACTTGCGGGCAACCAGCCCCACCACCACCACAACCATCATCATAAG
CATCACACTACGGTCGATCTGAAAGCACCCCAATCCACCACCGCCAGCGACGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4295#0      CCGCGGACGCGTGGGCGAAAGTGGACAAAGCACGCGCAGTGCTTGTTGATTATTGGTGAC 60
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      CGATGGTAGTAGTGCGCGCATGGAAGTGATATTGGAACCTTAAAGTGGAGAGAGGCGTTT 120
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      GGGTATTTCCGATGGTGTAGCTTTTCCAATATAGTTTTGTGGATTTTCAACCATGAAATA 180
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      AAAACAGTCCGTTAGCAGTGTTACTCAAGATTTTCGAAAAATGCACTTTGGAATTTGTCA 240
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      TCACACTGCGGTCGATCTGAAAGCACCCCAATCCACCACCGCTAGCGATGAAAAGCCACC 300
consensus_4295#1      ---------------------------------------------------CGACCCACG 9
                                                                           * **** 

consensus_4295#0      ACTTCGGGAGAAATGGGGCCGCAACATCGAGTTCCTACTCTCCTGCGTCGCCCTGTCCGT 360
consensus_4295#1      CGTCCGCGCGGCACAAG----CAAACGCGCGAAACCACAAGACAA----GACCAAGAAAG 61
                        * ** * *  *   *    ***   ** *   * **    *      * **       

consensus_4295#0      TGGCTTCGGCAATGTGTGGCGCTTCCCGTACACA-GCGTTCAAGAACGGTGGCGGTGCAT 419
consensus_4295#1      TGCATTCGGTAGCGTAGAAAGTTCGGTGTGCAAGCGCGTGCAAGAAGTGTG-CGAGAGAA 120
                      **  ***** *  **     * *    ** **   **** ******  *** **    * 

consensus_4295#0      TCGTCATCCCGTACCTGATTGTACTGTTCATCAT-CGGACGCCCGATCTACTATCTGGAG 478
consensus_4295#1      GGGCCA-CACGAGTACGAGAAGAGTGGCCACGGTTCGGGAATTCCCACGTTTTTCCCCCA 179
                        * ** * **     **    * **  **   * ***     *   *   * **     

consensus_4295#0      ATGGTGCTGGGTCAGTTTTCCAACCGTGGTTGCGTTAAGGTGTACGACCTAGCAC-CTGC 537
consensus_4295#1      ACG--ACCGAGCGGAATGGAAAATCGAAGCTACGTCGGTG-ATGAAACCTGGAATGCCGA 236
                      * *   * * *     *    ** **  * * ***    *  *   **** * *  * * 

consensus_4295#0      CATGCGTGGTATCGGTGTCGGTCAAACGGTTGCCATCTTCACCGTCATCACCTACTATGC 597
consensus_4295#1      CACGCTGCCGGTCGGGG--GACTTGCGGGCAACCAGCCCCACCACCACCACA-ACCAT-C 292
                      ** **      **** *  *       **   *** *  ****  ** ***  ** ** *

consensus_4295#0      GTCGGTGCTGGCCGTCACCCTGCGGT--ACCTGGTTGCCTCGTTCAATCCCGAGCTGCCC 655
consensus_4295#1      ATCA----TAAGCATCACACTACGGTCGATCTGAAAGCACC--CCAATCCACCACCGCCA 346
                       **     *   * **** ** ****  * ***   **  *   ******    * *** 

consensus_4295#0      TGGGCTAAGTGTGACCCAACCTGGCCGGACTGTGTCGATTCTAGCCGGCTCGGTAGCATT 715
consensus_4295#1      GCGACGAAAA-------------------------------------------------- 356
                        * * **                                                    

consensus_4295#0      GCCCTTGGACCGAACGTAACGCAACCGAAAACCTCGGCCGATCTGTACTTCCGCAAAACG 775
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      GTAATGCATGCCGCTGACTCACTGGACGATGGGTTGGGATATCCCGACTGGCGGCTGGCA 835
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      CTATGCCTAGTCGCTTCCTGGATTTGCATCGTGGGCATCCTGATCAAAGGCATTAAGAGC 895
consensus_4295#1      ------------------------------------------------------------
                                                                                  

consensus_4295#0      TCCGGCAAGGTTTCGTACTTCCTTGCCATCTTCCCGTACATCATCAT 942
consensus_4295#1      -----------------------------------------------