cluster # 4299

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Anopheles gambiae
cluster # 4299 cluster # 4299 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4299#0 length = 715 sequences # 2

consensus_4299#1 length = 620 sequences # 1

consensusID : consensus_4299#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence

                              [AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTGTACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAACATTCTGAAAACNGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCGTCCGACATCGCCCCGGACTGGGTGGACGGGGACGTGTGCCACCGCTGCCGGTCTCAGTTCACGTTCACGGTGCGCAAGCACCACTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC]

[+] EMBL BX624321             [AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTGTACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAACATTCTGAAAACNGA                                                                                                                                                                 ]
[+] EMBL BX605182             [                                                        CCTGTACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAACATTCTGAAAACGGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCGTCCGACATCGCCCCGGACTGGGTGGACGGGGACGTGTGCCACCGCTGCCGGTCTCAGTTCACGTTCACGGTGCGCAAGCACCACTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC]




>consensus_4299#0
AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTG
TACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAA
CACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAA
AATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGAT
ACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATG
CAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAG
AACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAG
AATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAG
GCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAAC
ATTCTGAAAACNGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCG
TCCGACATCGCCCCGGACTGGGTGGACGGGGACGTGTGCCACCGCTGCCGGTCTCAGTTC
ACGTTCACGGTGCGCAAGCACCACTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC

consensusID : consensus_4299#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [TCGCCCGAGGTTTATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGTAAGGTGCCGTTCGTCGTGCCTTGTGTGTGCGCATTGTCGACGAGTTGACAGTCGGTTGCCAGCGTTGAAGGCGAATGCANACGCCTGTGTAGAACAAAAACACGTCGGTCTTGGTGTAGTATTCATTTNTTTTTNACNGNTAAGGAAAAATTAGCAACTTCTTTTATNTCCATACA]

[+] EMBL AL934985             [TCGCCCGAGGTTTATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGTAAGGTGCCGTTCGTCGTGCCTTGTGTGTGCGCATTGTCGACGAGTTGACAGTCGGTTGCCAGCGTTGAAGGCGAATGCANACGCCTGTGTAGAACAAAAACACGTCGGTCTTGGTGTAGTATTCATTTNTTTTTNACNGNTAAGGAAAAATTAGCAACTTCTTTTATNTCCATACA]




>consensus_4299#1
TCGCCCGAGGTTTATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAAT
GTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGA
ACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGC
CAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCAT
GTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGA
GATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGA
GGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCAC
CATCAAGTATCGCTCGATAAAGGTAAGGTGCCGTTCGTCGTGCCTTGTGTGTGCGCATTG
TCGACGAGTTGACAGTCGGTTGCCAGCGTTGAAGGCGAATGCANACGCCTGTGTAGAACA
AAAACACGTCGGTCTTGGTGTAGTATTCATTTNTTTTTNACNGNTAAGGAAAAATTAGCA
ACTTCTTTTATNTCCATACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4299#0      AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTG 60
consensus_4299#1      ------------------------------------------------------------
                                                                                  

consensus_4299#0      TACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAA 120
consensus_4299#1      --------------------------TCGCCCGAGGTTTATTTTACCAATCGGATCGAAA 34
                                                    *  *   * *********************

consensus_4299#0      CACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAA 180
consensus_4299#1      CACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAA 94
                      ************************************************************

consensus_4299#0      AATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGAT 240
consensus_4299#1      AATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGAT 154
                      ************************************************************

consensus_4299#0      ACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATG 300
consensus_4299#1      ACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATG 214
                      ************************************************************

consensus_4299#0      CAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAG 360
consensus_4299#1      CAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAG 274
                      ************************************************************

consensus_4299#0      AACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAG 420
consensus_4299#1      AACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAG 334
                      ************************************************************

consensus_4299#0      AATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAG 480
consensus_4299#1      AATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAG 394
                      ************************************************************

consensus_4299#0      GCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAAC 540
consensus_4299#1      GCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGG-TAAGGTGCCG 453
                      ***** ******************************************* ** * **   

consensus_4299#0      ATTCTGAAAACNGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCG 600
consensus_4299#1      TTCGTCGTGCCTTGTGTGTGCGCATTGTCGACGAGTTGACAGTCGGTTGCCAG--CGTTG 511
                       *  *     *    *    *  ***  **  *       *  * *  ****     * *

consensus_4299#0      TCCGACATCGCCCCGGACTGGGTGGA-CGGGGACGTGT-GCCACCGCTGCCGGTCTCAGT 658
consensus_4299#1      AAGGCGAATGCANACGCCTGTGTAGAACAAAAACACGTCGGTCTTGGTGTAGTATTCATT 571
                         *  *  **    * *** ** ** *    **  ** *     * **  *   *** *

consensus_4299#0      TCACGTTCACGGT-GCGCAAGCACCA-CTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC 715
consensus_4299#1      TNTTTTTNACNGNTAAGGAAAAATTAGCAACTTCTTTTATNTCCATACA---------- 620
                      *    ** ** *    * **  *  * *  *  *   * *  ***