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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1351 fasta sequence
[ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTTTAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTCCGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCGACCGCGGACGATCTCGGCCAGCTGTACCCGTGGCGCGAGGATGAGATTGTGATCGCCGACAGCGAACCGATCCTGATCGCACTGTACCACGTCCCGAGCCGCCAGGTGCTGTCGTATTATCAACGGCGCGAGAGTGATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGAGCTGGTCGTGTGCTACTCCTTCACGGATCTCAGCAAACCACCCGAAATACTTGTTCTCGCGTCGATGGATCGCGTGGTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCTCCTGTGGAGTCCGGATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACGATTTGGAACTTCTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTAGCGGTAG-TCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCAGTTCCTGGGACGCTTCTCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTCTGGCCTCGAGTTTTCTTTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAGCCCGTAGAGTCTTACAGGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTCATCGAATGCGAGTAGGTAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAATGAAGACAAGCTTTTTCCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATTCGGACTGAGTTTGTTTACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAGAATGCAAACGTTGTATAGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTATTTTATATTTAAAGTTCATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTTACCGAGGCCTTCGTGCTTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATTTGATTTTTCTGGCGCAACTACCACAAGCCTATTAAAACATTGTTAGC]
[+] EMBL CNS090YJ [ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTTTAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTCCGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCGACCGCGGACGATCTCGGCCAGCTGTACCCGTGGCGCGAGGATGAGATTGTGATCGCCGACAGCGAACCGATCCTGATCGCACTGTACCACGTCCCGAGCCGCCAGGTGCTGTCGTATTATCAACGGCGCGAGAGTGATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGAGCTGGTCGTGTGCTACTCCTTCACGGATCTCAGCAAACCACCCGAAATACTTGTTCTCGCGTCGATGGATCGCGTGGTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCTCCTGTGGAGTCCGGATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACGATTTGGAACTTCTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTAGCGGTAG TCACGGACCGATGGAAGAGCGTGTGG ]
[-] EMBL CNS090YK [ TATGATGAAACGCTCACGATTTGGAACTTTTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTAGCGGTGGCTCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCAGTTCCTGGGACGCTTCTCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTCTGGCCTCGAGTTTTCTTTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAGCCCGTAGAGTCTTACAGGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTCATCGAATGCGAGTAGGTAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAATGAAGACAAGCTTTTTCCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATTCGGACTGAGTTTGTTTACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAGAATGCAAACGTTGTATAGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTATTTTATATTTAAAGTTCATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTTACCGAGGCCTTCGTGCTTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATTTGATTTTTCTGGCGCAACTACCACAAGCCTATTAAAACATTGTTAGC]
consensusID : consensus_4306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGCCGGAACAGAAAACGGATCCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACTATTCGAGCGTGCTGAAAAGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCTTCCGCGATAGCACCAGCCGGCAGGTTTGCAAACGGCTCGCCAACAAGCGCCCGCTGGAGTGCATCGTCCGCCCCACGTACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCGCACCAAACCGATTGGGTTCATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTACTATCACAAAATCATCGACTGGTCCGCGGCCGGGCAGATTGCGGCAATCTTCAGCAAAAAGCTCGTCATCTGGACACCCAACACGGACGAGATCATTGGGCTGGGGGCCCAGTACGCGACGTCGATCGCGTTCGAGCCGGCGGGCACCCGGCTGGGCATGGGCATTTTTATGATGAACCGACCGTGGCTGAACATC]
[+] EMBL BX627575 [GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGCCGGAACAGAAAACGGATCCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACTATTCGAGCGTGCTGAAAAGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCTTCCGCGATAGCACCAGCCGGCAGGTTTGCAAACGGCTCGCCAACAAGCGCCCGCTGGAGTGCATCGTCCGCCCCACGTACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCGCACCAAACCGATTGGGTTCATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTACTATCACAAAATCATCGACTGGTCCGCGGCCGGGCAGATTGCGGCAATCTTCAGCAAAAAGCTCGTCATCTGGACACCCAACACGGACGAGATCATTGGGCTGGGGGCCCAGTACGCGACGTCGATCGCGTTCGAGCCGGCGGGCACCCGGCTGGGCATGGGCATTTTTATGATGAACCGACCGTGGCTGAACATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4306#0 ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTT 60
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 TAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTC 120
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 CGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGC 180
consensus_4306#1 -----------------GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGC 43
*******************************************
consensus_4306#0 TGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATC 240
consensus_4306#1 TGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATC 103
************************************************************
consensus_4306#0 GATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCG-ACCGCGGAC 299
consensus_4306#1 GATTTATTCCCCGTCGATACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGC 163
******************************* ********** ** **** * ** *
consensus_4306#0 GATCTCGGCCAGCTGTACCCGTGGCG-CGAGGATGA--GATTGTGATCG--CCGACAGCG 354
consensus_4306#1 CGGAACAGAAAACGGATCCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACT 223
* * * * * ** *** * * **** * * ** ** * *
consensus_4306#0 AACCGATCCTGATCGCACTGTACCACGTCCCGAGC-CGCCAGGTGCTGTCGTATTATCAA 413
consensus_4306#1 ATTCGAGCGTGCTGAAAAGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCT 283
* *** * ** * * * * ** * * * ** * * * ** * **
consensus_4306#0 CGGCGCGAGAGT----GATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGA 469
consensus_4306#1 TC-CGCGATAGCACCAGCCGGCAGGTTTGCAAACGGCTCGC-CAACAAGCGCCCGCTGGA 341
***** ** * * * ** * * *** ******** * **
consensus_4306#0 GCTGGTCGTGTGCTACTCCTTCACGGATCT-CAGCAAACCACCCGAAATACTTGTTCTCG 528
consensus_4306#1 GTGCATCGTCCGCCCCACGTACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCG 401
* **** ** * * * ** * * *** * * * * * * **
consensus_4306#0 CGTCGA-TGGATCGCGTG-GTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCT 586
consensus_4306#1 CACCAAACCGATTGGGTTCATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTAC-T 460
* * * *** * ** * ** * *** * *** *** ** ** *
consensus_4306#0 CCTGTGGAGTC--CGGATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACG 644
consensus_4306#1 ATCACAAAATCATCGACTGGTCCGCGGCCGG-----GCAGATTGCGGC--AATCTTCAGC 513
* ** ** *** ** ** ** * ** * * ** ***
consensus_4306#0 ATTTGGAACTTCTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGC 704
consensus_4306#1 AAAAAGCTCGTCATCTGGACACCCAACACGGACGAGATCATTGGGCTGGGGGCCCAGTAC 573
* * * ** ** * ** * *** **** ** * * * ** * *
consensus_4306#0 GAACCGCCGGTCAGTAGCGGTAGTCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCA 764
consensus_4306#1 GCGACGTCGATC----GCGTT-----CGAGCCGGCGGGCACCCGGCTGGGCATG--GGCA 622
* ** ** ** *** * ** *** ** ** *** *** ****
consensus_4306#0 GTTCCTGGGACGCTTCTCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTC 824
consensus_4306#1 -TTTTTATGATGAACCGACCGTGGCTGAACATC--------------------------- 654
** * ** * * * * * * *
consensus_4306#0 TGGCCTCGAGTTTTCTTTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAG 884
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 CCCGTAGAGTCTTACAGGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTC 944
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 ATCGAATGCGAGTAGGTAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAA 1004
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 TGAAGACAAGCTTTTTCCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATT 1064
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 CGGACTGAGTTTGTTTACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAG 1124
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 AATGCAAACGTTGTATAGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTAT 1184
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 TTTATATTTAAAGTTCATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTT 1244
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 ACCGAGGCCTTCGTGCTTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATT 1304
consensus_4306#1 ------------------------------------------------------------
consensus_4306#0 TGATTTTTCTGGCGCAACTACCACAAGCCTATTAAAACATTGTTAGC 1351
consensus_4306#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||