cluster # 4320

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Anopheles gambiae
cluster # 4320 cluster # 4320 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4320#0 length = 705 sequences # 2

consensus_4320#1 length = 681 sequences # 1

consensusID : consensus_4320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 705
fasta sequence

                              [ACCACCCCTTCTCCATTTTCACAGAAGTTGGACCGTTCCGACCGCATATCTACTTCGGCGTGCACGTACTTCCCCTTTCCCTTAAGTGTTCCCCGTTTGCATGCACGCCAACCCGAGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGCTGCTGCTGCTGCTGACACGGNATAAATGTAAGGATATACAAAGGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGGGTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCCTCCTCCNCCTCCTCCGCTGATCCCGGTGTTCGATTCNATTGGCGGCGATGGCGAGCAGCAACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCNACGTCGATCAAGTTCATCTGCATCGNCACGCTGGTCGGNTACCTGATTTCCTTCTCCNAGCGCATATCGGNGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCATCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGGTCGGGCTGTGCGGCAAGCTGATCTAACCGTCCTGGGGGCAGATGGAGATGCTGCACTACTTCGCCATC]

[+] EMBL BX627920             [ACCACCCCTTCTCCATTTTCACAGAAGTTGGACCGTTCCGACCGCATATCTACTTCGGCGTGCACGTACTTCCCCTTTCCCTTAAGTGTTCCCCGTTTGCATGCACGCCAACCCGAGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGCTGCTGCTGCTGCTGACACGGNATAAATGTAAGGATATACAAAGGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGGGTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCCTCCTCCNCCTCCTCCGCTGATCCCGGTGTTCGATTCNATTGGCGGCGATGGCGAGCAGCAACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCNACGTCGATCAAGTTCATCTGCATCGNCACGCTGGTCGGNTACCTGATTTCCTTCTCCNAGCGCATATCGGNGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCATCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGGTCGGGCTGTGCGGCAAGCTGATCTAACCGTCCTGGGGGCAGATGGAGATGCTGCACTACTTCGCCATC]
[+] EMBL BX623279             [                   agattAAGTTGGACCGTTCCGACCGCATATCTACTTCGGCGTGCACGTACTTCCCCTTTCCCTTAAGTGTTCCCCGTTTGCATGCACGCCAACCCGAGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGCTGCTGCTGCTGCTGACACGGCATAAATGTAAGGATATACAAAGGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGGGTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCCTCCTCCCCCTCCTCCGCTGATCCCGGTGTTCGATTCGATTGGCGGCGATGGCGAGCAGCAACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCGACGTCGATCAAGTTCATCTGCATCGCCACGCTGGTCGGCTACCTGATTTCCTTCTCCGAGCGCATATCGGTGATGCTGTGCGTGACGCCCGGCTA                                                                                                                                                                ]




>consensus_4320#0
ACCACCCCTTCTCCATTTTCACAGAAGTTGGACCGTTCCGACCGCATATCTACTTCGGCG
TGCACGTACTTCCCCTTTCCCTTAAGTGTTCCCCGTTTGCATGCACGCCAACCCGAGCTG
CTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGCTGCTG
CTGCTGCTGACACGGNATAAATGTAAGGATATACAAAGGCACACGCACCGTGCCGGGATC
CGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGGGTCGCTGCTGCAGGACGACGACG
ACGACGACCGGAACCGGAGGATTGCGTACACCCCTCCTCCTCCNCCTCCTCCGCTGATCC
CGGTGTTCGATTCNATTGGCGGCGATGGCGAGCAGCAACAATGCACTGTACCTCCGGCAG
CAGATGGCGGCCCTGCTCGGCAGCACCTCNACGTCGATCAAGTTCATCTGCATCGNCACG
CTGGTCGGNTACCTGATTTCCTTCTCCNAGCGCATATCGGNGATGCTGTGCGTGACGCCC
GGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCATCTTTACCTACTTCTTCATCGAG
CAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGGTCGGGCTGTGCGGCAAGCTGATC
TAACCGTCCTGGGGGCAGATGGAGATGCTGCACTACTTCGCCATC

consensusID : consensus_4320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGGCAAAACAACACAGCGATCAAAGATTAAGTTGGACCGTTCCGACCGCATATCTACTTCAGCGTGCACGTACCTCCCCTTTCCCGTAAGTGTTCCCCGTTTGCATGCACGCCAACCCGAGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACACGGCATAAATGTAAGGATATACAAAGGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGGGTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCCTCCTCCCCCTCCTCCGCTGATCCCGGTGTTCGATTCGATTGGCGGCGATGGCGAGCAGCAACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCGACGTCGATCAAGTTCATCTGCATCGCCACGCTGGTCGGCTACCTGATTTCCTTCTCCGAGCGCATATCGGTGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCATCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGGTCGGGCTGTGCGGCAAGCTGA]

[+] EMBL BM575762             [CCGGCAAAACAACACAGCGATCAAAGATTAAGTTGGACCGTTCCGACCGCATATCTACTTCAGCGTGCACGTACCTCCCCTTTCCCGTAAGTGTTCCCCGTTTGCATGCACGCCAACCCGAGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACACGGCATAAATGTAAGGATATACAAAGGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGGGTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCCTCCTCCCCCTCCTCCGCTGATCCCGGTGTTCGATTCGATTGGCGGCGATGGCGAGCAGCAACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCGACGTCGATCAAGTTCATCTGCATCGCCACGCTGGTCGGCTACCTGATTTCCTTCTCCGAGCGCATATCGGTGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCATCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGGTCGGGCTGTGCGGCAAGCTGA]




>consensus_4320#1
CCGGCAAAACAACACAGCGATCAAAGATTAAGTTGGACCGTTCCGACCGCATATCTACTT
CAGCGTGCACGTACCTCCCCTTTCCCGTAAGTGTTCCCCGTTTGCATGCACGCCAACCCG
AGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACACGGCATAAATGTAAGGATATACAAA
GGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGG
GTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCC
TCCTCCCCCTCCTCCGCTGATCCCGGTGTTCGATTCGATTGGCGGCGATGGCGAGCAGCA
ACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCGACGTCGA
TCAAGTTCATCTGCATCGCCACGCTGGTCGGCTACCTGATTTCCTTCTCCGAGCGCATAT
CGGTGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCA
TCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGG
TCGGGCTGTGCGGCAAGCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4320#0      --ACCACCCCTTCTCCATTTTCACAGA---AGTTGGACCGTTCCGACCGCATATCTACTT 55
consensus_4320#1      CCGGCAAAACAACACAGCGATCAAAGATTAAGTTGGACCGTTCCGACCGCATATCTACTT 60
                          **   *  * *     *** ***   ******************************

consensus_4320#0      CGGCGTGCACGTACTTCCCCTTTCCCTTAAGTGTTCCCCGTTTGCATGCACGCCAACCCG 115
consensus_4320#1      CAGCGTGCACGTACCTCCCCTTTCCCGTAAGTGTTCCCCGTTTGCATGCACGCCAACCCG 120
                      * ************ *********** *********************************

consensus_4320#0      AGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGC 175
consensus_4320#1      AGCTGCTCCAGCCGCCCTGTCCGTGACTGCCGTTGCCGCTGTTATCGTCGCTGCTGCTGC 180
                      ************************************************************

consensus_4320#0      TGCTGCTGCTGCTG------------------ACACGGNATAAATGTAAGGATATACAAA 217
consensus_4320#1      TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACACGGCATAAATGTAAGGATATACAAA 240
                      **************                  ****** *********************

consensus_4320#0      GGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGG 277
consensus_4320#1      GGCACACGCACCGTGCCGGGATCCGTGCGCTTTTGGCCGTGCTAGAGCGGGAAGCAACGG 300
                      ************************************************************

consensus_4320#0      GTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCC 337
consensus_4320#1      GTCGCTGCTGCAGGACGACGACGACGACGACCGGAACCGGAGGATTGCGTACACCCCTCC 360
                      ************************************************************

consensus_4320#0      TCCTCCNCCTCCTCCGCTGATCCCGGTGTTCGATTCNATTGGCGGCGATGGCGAGCAGCA 397
consensus_4320#1      TCCTCCCCCTCCTCCGCTGATCCCGGTGTTCGATTCGATTGGCGGCGATGGCGAGCAGCA 420
                      ****** ***************************** ***********************

consensus_4320#0      ACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCNACGTCGA 457
consensus_4320#1      ACAATGCACTGTACCTCCGGCAGCAGATGGCGGCCCTGCTCGGCAGCACCTCGACGTCGA 480
                      **************************************************** *******

consensus_4320#0      TCAAGTTCATCTGCATCGNCACGCTGGTCGGNTACCTGATTTCCTTCTCCNAGCGCATAT 517
consensus_4320#1      TCAAGTTCATCTGCATCGCCACGCTGGTCGGCTACCTGATTTCCTTCTCCGAGCGCATAT 540
                      ****************** ************ ****************** *********

consensus_4320#0      CGGNGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCA 577
consensus_4320#1      CGGTGATGCTGTGCGTGACGCCCGGCTACCTGATGCCGCCCACCTTCTGGGTGTGGACCA 600
                      *** ********************************************************

consensus_4320#0      TCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGG 637
consensus_4320#1      TCTTTACCTACTTCTTCATCGAGCAGCACTTCTGGGAGGTGCTGGTCGATCTGGTGACGG 660
                      ************************************************************

consensus_4320#0      TCGGGCTGTGCGGCAAGCTGATCTAACCGTCCTGGGGGCAGATGGAGATGCTGCACTACT 697
consensus_4320#1      TCGGGCTGTGCGGCAAGCTGA--------------------------------------- 681
                      *********************                                       

consensus_4320#0      TCGCCATC 705
consensus_4320#1      --------