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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[CCGATCGTATAATCCAAAGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTACTTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGGTCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCGCTATCGTGTTTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTTGAAGAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATGCAGCTGGCGCAGATGATCAATGACGCCAAAACAAAGATGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAAGCAGCGCCAAACCGACCAACGCTCCATTGAAACACGTTTGCATCGATTGGAT-CGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAGTAACGCTGGCACTGCCGGCAGTATATTCAGGCAGCGGTTCCATCACCGGCCAAGCGTCACAATCAGCTGGCAACATCTTTGGCACAGCTGCCTCCAGCACCGGCAATATATTTGCCAAACCTGCACAGCAACCTGCCGCTGGCAAATATCT]
[+] EMBL BM604051 [CCGATCGTATAATCCAAAGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTACTTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGGTCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCGCTATCGTGTTTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTTGAAGAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATGCAGCTGGCGCAGATGATCAATGACGCCAAAACAAAGATGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAAGCAGCGCCAAACCGACCAACGCTCCATTGAAACACGTTTGCATCGATTGGAT CGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCA ]
[+] EMBL BM592099 [ ccgGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTACTTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGGTCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCACTGTCGTGTTTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTCGAAGAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATGCAGCTGGCGCAGATGATCAATGACGCCAAAACAAAGATGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAAGCAGCGCCAAACCGACCAACGCTCCATTG AACACGTTTGCATCGATTGGATCCGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAGTAACGCTGGCACTGCCGGCAGTATATTCAGGCAGCGGTTCCATCACCGGCCAAGCGTCACAATCAGCTGGCAACATCTTTGGCACAGCTGCCTCCAGCACCGGCAATATATTTGCCAAACCTGCACAGCAACCTGCCGCTGGCAAATATCT]
consensusID : consensus_4349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[CAAAACATAANNTGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGNNAAGCAGCGCCAAACCGACCAACGCTCCATTGAACACGTTCTGCATCNATNGGATCGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAATAACGCNTGGCACTGCCGGCAGTATATTCGGCAGCGGATCCATCACCGGCCCAAGCGTCACAAATCANNCTGGCAACATCTCCCGGCTCAGCTGCCTCCACCACCAGCAACATATTTGCCAAAAACCTGCCCCAGNCAACCTGCT]
[+] EMBL BX619441 [CAAAACATAANNTGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGNNAAGCAGCGCCAAACCGACCAACGCTCCATTGAACACGTTCTGCATCNATNGGATCGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAATAACGCNTGGCACTGCCGGCAGTATATTCGGCAGCGGATCCATCACCGGCCCAAGCGTCACAAATCANNCTGGCAACATCTCCCGGCTCAGCTGCCTCCACCACCAGCAACATATTTGCCAAAAACCTGCCCCAGNCAACCTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4349#0 CCGATCGTATAATCCAAAGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTAC 60
consensus_4349#1 ------------------------------------------------------------
consensus_4349#0 TTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGG 120
consensus_4349#1 ------------------------------------------------------------
consensus_4349#0 TCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCGCTATCGTGT 180
consensus_4349#1 ------------------------------------------------------------
consensus_4349#0 TTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTTGAA 240
consensus_4349#1 ------------------------------------------------------------
consensus_4349#0 GAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATG 300
consensus_4349#1 ------------------------------------------------------------
consensus_4349#0 CAGCTGGCGCAGATGATCAATGACGCCAAAACA-AAGATGCAATGTCTCACTACAATGAA 359
consensus_4349#1 --------------------------CAAAACATAANNTGCAATGTCTCACTACAATGAA 34
******* ** **********************
consensus_4349#0 CAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAA-GCAGCGCCAAAC 418
consensus_4349#1 CAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGNNAAGCAGCGCCAAAC 94
******************************************** * ************
consensus_4349#0 CGACCAACGCTCCATTGAAACACGTT-TGCATCGATTGGATCGGGTGGAAGTAATGCTCC 477
consensus_4349#1 CGACCAACGCTCCATTGAA-CACGTTCTGCATCNATNGGATCGGGTGGAAGTAATGCTCC 153
******************* ****** ****** ** ***********************
consensus_4349#0 GGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATC 537
consensus_4349#1 GGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATC 213
************************************************************
consensus_4349#0 CAGCGCTGCCATCGGTGGTAGTAACGCT-GGCACTGCCGGCAGTATATTCAGGCAGCGGT 596
consensus_4349#1 CAGCGCTGCCATCGGTGGTAATAACGCNTGGCACTGCCGGCAGTATATTC-GGCAGCGGA 272
******************** ****** ********************* ********
consensus_4349#0 TCCATCACCGGCC-AAGCGTCACAATC--AGCTGGCAACATCTTT-GGCACAGCTGCCTC 652
consensus_4349#1 TCCATCACCGGCCCAAGCGTCACAAATCANNCTGGCAACATCTCCCGGCTCAGCTGCCTC 332
************* *********** ************ *** **********
consensus_4349#0 CAGCACCGGCAATATATTTGCCAAA--CCTGCAC--AGCAACCTGCCGCTGGCAAATATC 708
consensus_4349#1 CACCACCAGCAACATATTTGCCAAAAACCTGCCCCAGNCAACCTGCT------------- 379
** **** **** ************ ***** * ********
consensus_4349#0 T 709
consensus_4349#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||