cluster # 4356

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Anopheles gambiae
cluster # 4356 cluster # 4356 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4356#0 length = 772 sequences # 2

consensus_4356#1 length = 432 sequences # 1

consensusID : consensus_4356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence

                              [GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAAGGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTCCGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACCACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCGCCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCTCAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGGCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAGTTTAGTAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGTCATACACG]

[+] EMBL BX626402             [GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAAGGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTCCGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACCACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCGCCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCTCAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGGCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAG                                                         ]
[+] EMBL BM648764             [                                                                                                                                                                                                                                                                                                                                                                                   ccgGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACCACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCGCCGAACCTTAAAGGATACAGTAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCTCAAGGAGGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGCCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAGTTTAGTAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGTCATACACG]




>consensus_4356#0
GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAA
GGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTC
CGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAAC
CGCGGAAGACAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAA
CCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAG
CCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGT
GTCAGTACAACAGTGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACC
ACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCG
CCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGT
ACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCT
CAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGGCGGGTGATGCCC
ATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAGTTTAG
TAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGTCATACACG

consensusID : consensus_4356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GCAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCCCGTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAGAAAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAGCGCAACGGAAAG]

[+] EMBL BX468786             [GCAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCCCGTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAGAAAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAGCGCAACGGAAAG]




>consensus_4356#1
GCAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAA
CCGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCG
AACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTC
AGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACA
GTGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCC
CGTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAG
AAAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAG
CGCAACGGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4356#0      GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAA 60
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      GGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTC 120
consensus_4356#1      -----------------------------------------------------------G 1
                                                                                  

consensus_4356#0      CGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAAC 180
consensus_4356#1      CAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAAC 61
                      *  *  **    *  *********************************************

consensus_4356#0      CGCGGAAGACAA-GCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGA 239
consensus_4356#1      CGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGA 121
                      ************ ***********************************************

consensus_4356#0      ACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCA 299
consensus_4356#1      ACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCA 181
                      ************************************************************

consensus_4356#0      GCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAG 359
consensus_4356#1      GCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAG 241
                      ************************************************************

consensus_4356#0      TGTCAGTACAACAGTGAGCAGTGTCACGGAG-CAGGATACTA--CTACGGTGAG--CCCC 414
consensus_4356#1      TGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCCC 301
                      ******************************* *********   ********    ****

consensus_4356#0      GTTACCACCACCGAGCC--AGAGTCCGTACCGACGCC--GGCGAAG-CAGAAGGCCAAGA 469
consensus_4356#1      GTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAGA 361
                      **** ** *********     ************* *  ******* *************

consensus_4356#0      A-GCAAGTTCC---GCCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAA-GC 524
consensus_4356#1      AAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAGC 421
                      * ***** * *   **  * * *** ***** ************************* **

consensus_4356#0      GCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAA 584
consensus_4356#1      GCAACGGAAAG------------------------------------------------- 432
                      ****** **                                                   

consensus_4356#0      TGCAGATAATGCAGCTCAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTC 644
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      TGGGCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAG 704
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      ATAAGGAATAGTTTAGTAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGT 764
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      CATACACG 772
consensus_4356#1      --------