cluster # 4361

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Anopheles gambiae
cluster # 4361 cluster # 4361 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4361#0 length = 805 sequences # 2

consensus_4361#1 length = 401 sequences # 1

consensusID : consensus_4361#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 805
fasta sequence

                              [CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAATTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGGAAGGGGTTTGTTGCATCCTGTTGTCTTGTTTAAGTGTCATTACTCTTCGTGTTCGTTAAACGGTCATGCTCGATTAGGTGCACTTCGTTTTTTTTTAATAATTTCTCTCTCTCCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATATTTATTACCGTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAGCAAAAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTAC-TACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTATTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATATGCCCCCCTTTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGCAAACAACTGACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGCCGACATTGAATACTTTTTAAGAAAGTGTCATTTT]

[+] EMBL BM575881             [CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAATTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGGAAGGGGTTTGTTGCATCCTGTTGTCTTGTTTAAGTGTCATTACTCTTCGTGTTCGTTAAACGGTCATGCTCGATTAGGTGCACTTCGTTTTTTTTTAATAATTTCTCTCTCTCCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATATTTATTACCGTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAGCAAAAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTAC TACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTATTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATATGCCCCCCTTTTAA                                                                                                                                            ]
[+] EMBL BM632081             [                                                                                                                                                                                                   ccGTGCACTTCATTTTTTTTAAATAATTTCTCTCTCTCCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGAATCATTCAACATATTTATTACCGTATTCTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAG  GAAAAAAAAACAAAAAACAA     AACAATTCAAATACTCATTTATTACTACTTACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTATTATTATAGTT CCGGTTTTTCCCGTTCGTCTGCCTGAAGCAT   ACATATG CCCCATTTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGCAAACAACTGACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGCCGACATTGAATACTTTTTAAGAAAGTGTCATTTT]




>consensus_4361#0
CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAA
TTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGG
AAGGGGTTTGTTGCATCCTGTTGTCTTGTTTAAGTGTCATTACTCTTCGTGTTCGTTAAA
CGGTCATGCTCGATTAGGTGCACTTCGTTTTTTTTTAATAATTTCTCTCTCTCCTAATGT
CAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATATTTATTACC
GTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCT
TCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAA
ACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAGCAA
AAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTACTACTATTA
CTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTA
TTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATATGCCCCCCT
TTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGCAAACAACTG
ACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGCCGACATTGA
ATACTTTTTAAGAAAGTGTCATTTT

consensusID : consensus_4361#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [AGGCAGAANCGGCACGTGNNGCTGTTTTTTTTTTTTCCCTTATCAGTACATTCATATCATCGAGTTATTGTAGTTTTGTTGTTTTTGCTGTCAATAATATAGATATTCTCACTCATCAGATGCAGCTGTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTTCATTTTTCTTCACTCTCGCCCTCTCTCTCTCTCTCTTTATGTATTGTAGTTTATAACACGATAATTGACAATAAAGAGTATGCTTTTNCAAAATGACACTATCTTAAGAAGTATTCAATGTCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCANTAGCGTCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT]

[+] EMBL BX468897             [AGGCAGAANCGGCACGTGNNGCTGTTTTTTTTTTTTCCCTTATCAGTACATTCATATCATCGAGTTATTGTAGTTTTGTTGTTTTTGCTGTCAATAATATAGATATTCTCACTCATCAGATGCAGCTGTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTTCATTTTTCTTCACTCTCGCCCTCTCTCTCTCTCTCTTTATGTATTGTAGTTTATAACACGATAATTGACAATAAAGAGTATGCTTTTNCAAAATGACACTATCTTAAGAAGTATTCAATGTCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCANTAGCGTCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT]




>consensus_4361#1
AGGCAGAANCGGCACGTGNNGCTGTTTTTTTTTTTTCCCTTATCAGTACATTCATATCAT
CGAGTTATTGTAGTTTTGTTGTTTTTGCTGTCAATAATATAGATATTCTCACTCATCAGA
TGCAGCTGTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTT
CATTTTTCTTCACTCTCGCCCTCTCTCTCTCTCTCTTTATGTATTGTAGTTTATAACACG
ATAATTGACAATAAAGAGTATGCTTTTNCAAAATGACACTATCTTAAGAAGTATTCAATG
TCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCANTAGCG
TCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4361#0      CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAA 60
consensus_4361#1      -------------------------------AGGCAGAANCGGCACGTGNNGCTGTTTTT 29
                                                       * * ** **  *  *     *   *  

consensus_4361#0      TTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGG 120
consensus_4361#1      TTTTTTTCCCTTATCAGTACATTCATATCATCGAGTTATTGTA----------------- 72
                      *****       **   *   *  ** *    **  *  ****                 

consensus_4361#0      AAGGGGTTTGTTGCATCCTGTTGTC--TTGTTTAAGTGTCATTACTCTTCGTGTTC-GTT 177
consensus_4361#1      ----GTTTTGTTGT-TTTTGCTGTCAATAATATAGATATTCTCACTCATCAGATGCAGCT 127
                          * *******  *  ** ****  *  * **  * *  * **** **   * * * *

consensus_4361#0      AAACGGTCATGCTCGA----TTAGGTGC-ACTTCGTTTTTTTTTAATAATTTCTCTCTCT 232
consensus_4361#1      GTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTTCATTTTT 187
                         *   *  *  ***    ** *  ** * **  ******  * ** * **   * * *

consensus_4361#0      CCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATAT 292
consensus_4361#1      CTTCACTCTCGCCCTCTCTCTCTCTCTCTTT----ATGTATTGTAGTTTAT--AACACGA 241
                      * * *       * * *   *** *   ***     ** **  * * * **  ****   

consensus_4361#0      TTATTACCGTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTT 352
consensus_4361#1      TAATTGACA-ATAAAGAGTAT---GCTTTTNCAAAATGACACTATCTTAAGA--AGTATT 295
                      * ***  *  **    ***       ****  * ****  * **    **    * * **

consensus_4361#0      CGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGT-GTATGTACAATGGCTAAC 411
consensus_4361#1      CAATGTCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCAN 355
                      *  * **  **    *      *  * **  *  ** ** * ** ***    * **  * 

consensus_4361#0      ATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAA 471
consensus_4361#1      TAGCGTCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT-------------- 401
                         *** *       ** ** **  *    *      *  *  ***              

consensus_4361#0      CAGCAGCAAAAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTA 531
consensus_4361#1      ------------------------------------------------------------
                                                                                  

consensus_4361#0      CTACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGA 591
consensus_4361#1      ------------------------------------------------------------
                                                                                  

consensus_4361#0      TTGTGTCTATTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATA 651
consensus_4361#1      ------------------------------------------------------------
                                                                                  

consensus_4361#0      TGCCCCCCTTTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGC 711
consensus_4361#1      ------------------------------------------------------------
                                                                                  

consensus_4361#0      AAACAACTGACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGC 771
consensus_4361#1      ------------------------------------------------------------
                                                                                  

consensus_4361#0      CGACATTGAATACTTTTTAAGAAAGTGTCATTTT 805
consensus_4361#1      ----------------------------------