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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 938 fasta sequence
[CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTTTCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCCTCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGACTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTCAGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAGCGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA]
[+] EMBL BM596926 [CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTTTCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCCTCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGACTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTCAGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAGCGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTC ]
[+] EMBL BX623925 [ GTATGCCGAGGCTCCGGTAGGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAATGTCACCGCTCCTGGTCGTGGCTGTCCTCAGTCTCGCACAATTTCGCAAGATGACCCTGATGCCGAGGATTGTCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCATTCGTGGTTGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTAGGATTTCTCTCTACCGGCACCGAAGCTATCCCTGGTAACGCTGCAATGTACGATGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA]
consensusID : consensus_4372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCAAACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACCAACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAATTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGGTTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTTGTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAGTTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTAATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT]
[+] EMBL AL932099 [CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCAAACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACCAACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAATTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGGTTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTTGTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAGTTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTAATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4372#0 CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTT 60
consensus_4372#1 ------------------------------------------------------------
consensus_4372#0 TCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCC 120
consensus_4372#1 ------------------------------------------------------------
consensus_4372#0 TCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGG-ACCGGTGGTAGACATCCAAGG 179
consensus_4372#1 ---------------------------------CAGATCGCCCGAGTTTAACATCCAGTG 27
*** ** * * * ******* *
consensus_4372#0 ACTTGGAT-CAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACC 238
consensus_4372#1 GTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACC 87
* * * * *** ************** ********** *******************
consensus_4372#0 AGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAG-GAGAACAACGCTTCCGTGCTCCT 297
consensus_4372#1 AGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCT 147
******************* *********** **** ***********************
consensus_4372#0 CTCAGTGTACTTCCCTGGTCTGGTGTCATGAA-TGTCACCGCTCCTGGTCG-TGGTTGTC 355
consensus_4372#1 ATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTC 207
***************** * *********** ******** ********* *** ****
consensus_4372#0 CTCAG-CGACGCACTATTTCTCAGGATGACCCTGA------TGCCGAGGATT--GCCTCA 406
consensus_4372#1 CTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGT 267
***** ***** ***** ** *********** * ******* *
consensus_4372#0 CGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACG 466
consensus_4372#1 CACCTGGCCTTTACACCGGTAATTACGTATCCAAACG----GGAATACTATAACGNGGCG 323
* * * * * *** ** ** **** ** * ** ** ** **
consensus_4372#0 GAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGG 526
consensus_4372#1 CAAA--ATCCGGTACCCCGGT---CATGGCTACTACGGTACCA--ACTGGTGTNATNATG 376
* * *** * * * * ** * * * * * * * * * *
consensus_4372#0 ACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTA 586
consensus_4372#1 GTTNGGGCGCCATTTACCCGCT-TGTGGNNGTCATATGCTGGGAATTTCCCCTG--NGCG 433
* * * * * * * * * ** *** *** ** * ** *
consensus_4372#0 CCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTAT 646
consensus_4372#1 GCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGT--TGGGGAAGGGTTAATTNTTCT 491
** * * **** * * * *** * * * * * *** * *
consensus_4372#0 CCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTG 706
consensus_4372#1 NTGGGC-CGTTACCTGC--GAATNGGAAAANGGTGGGTGGAA-GACC--CAACTTGTTAC 545
* * * ** ** * * ** * * * ** ** * * **
consensus_4372#0 CCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCA 766
consensus_4372#1 CTAGAGG---TGTACCCTCCCTTTTA-TCCACGGCGTTTGTATCC-CGGGTTCCTCCTAG 600
* **** ** * *** * * **** ** ** * * ** * *** *
consensus_4372#0 AACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTA 826
consensus_4372#1 TTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGAC-----AGCTCACA 655
* ** * *** * * ** ** ** * * * ** *
consensus_4372#0 CCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACA 886
consensus_4372#1 TTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAA 715
***** * * * * * * * * ** * * * ** *
consensus_4372#0 TCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA 938
consensus_4372#1 ACTTAATTTANTNGTCGACCGTTGTACCGNTATAGC-GCTTTAT-------- 758
* * * * ** * * * * * * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||